miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24154 3' -60.2 NC_005263.2 + 5044 0.66 0.385464
Target:  5'- cGgCGGCCGaCUaUUGGCcgacgucggcgucGCGCCAaacAGCGu -3'
miRNA:   3'- -CgGCCGGC-GAgAACCG-------------UGCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 23206 0.66 0.383711
Target:  5'- cUCGGCCGCUCacgguuguuccaggUUGcGCagACGCCcGGCa -3'
miRNA:   3'- cGGCCGGCGAG--------------AAC-CG--UGCGGuUCGc -5'
24154 3' -60.2 NC_005263.2 + 47243 0.67 0.377618
Target:  5'- cGCCGGCCgGCaCgacgGGUACGCUGuccGCGc -3'
miRNA:   3'- -CGGCCGG-CGaGaa--CCGUGCGGUu--CGC- -5'
24154 3' -60.2 NC_005263.2 + 54 0.67 0.377618
Target:  5'- aUgGGcCCGCUUgcgGcGCACGUCAGGCa -3'
miRNA:   3'- cGgCC-GGCGAGaa-C-CGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 23290 0.67 0.376752
Target:  5'- cGCCGGCCGUaua-GGCcgaauacGCGCCGccgacgcccGGCGa -3'
miRNA:   3'- -CGGCCGGCGagaaCCG-------UGCGGU---------UCGC- -5'
24154 3' -60.2 NC_005263.2 + 3686 0.67 0.36988
Target:  5'- uGCCGGCCGUcgcgUCauacguucgaaugguUUGauugagcgccucgcGCACGCCGGGCc -3'
miRNA:   3'- -CGGCCGGCG----AG---------------AAC--------------CGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 45665 0.67 0.369026
Target:  5'- aGCUGGCCGCg-UUGcGCcagaaacaacuCGUCGAGCGg -3'
miRNA:   3'- -CGGCCGGCGagAAC-CGu----------GCGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 3971 0.67 0.369026
Target:  5'- gGCaGGCCGUUgUaacgGGCGCcgccGCCGAGCa -3'
miRNA:   3'- -CGgCCGGCGAgAa---CCGUG----CGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 33946 0.67 0.369026
Target:  5'- aCCGGCCGCc---GGCccgaaguCGCCAAGgCGg -3'
miRNA:   3'- cGGCCGGCGagaaCCGu------GCGGUUC-GC- -5'
24154 3' -60.2 NC_005263.2 + 46817 0.67 0.363937
Target:  5'- cGCCGaUCGCguaacgcaacGCGCGCCAGGCGg -3'
miRNA:   3'- -CGGCcGGCGagaac-----CGUGCGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 29499 0.67 0.36057
Target:  5'- uGCCGcgaacGCCGCUgCggcguccgucGGCGCGCCAgcAGUGg -3'
miRNA:   3'- -CGGC-----CGGCGA-Gaa--------CCGUGCGGU--UCGC- -5'
24154 3' -60.2 NC_005263.2 + 16581 0.67 0.359732
Target:  5'- gGCCGGCggcgacgCGUUCgccgGGCucGCGCgCGAGCa -3'
miRNA:   3'- -CGGCCG-------GCGAGaa--CCG--UGCG-GUUCGc -5'
24154 3' -60.2 NC_005263.2 + 16093 0.67 0.353076
Target:  5'- gGCCGGCUGUUCacccgcgcagcuacGGCA-GCCGAGaCGg -3'
miRNA:   3'- -CGGCCGGCGAGaa------------CCGUgCGGUUC-GC- -5'
24154 3' -60.2 NC_005263.2 + 30795 0.67 0.35225
Target:  5'- cGCCgGGCCGaa-UUcGCGCGCCGuGGCGa -3'
miRNA:   3'- -CGG-CCGGCgagAAcCGUGCGGU-UCGC- -5'
24154 3' -60.2 NC_005263.2 + 36002 0.67 0.35225
Target:  5'- cGCgCGcGCCGCUgc--GCAUGCCAGGCc -3'
miRNA:   3'- -CG-GC-CGGCGAgaacCGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 29051 0.67 0.35225
Target:  5'- cGCaGGCCGCgc--GGCGCGUCcucgGGGCGg -3'
miRNA:   3'- -CGgCCGGCGagaaCCGUGCGG----UUCGC- -5'
24154 3' -60.2 NC_005263.2 + 26716 0.67 0.35225
Target:  5'- gGCCGGCCuGC----GGCAgCGCgAAGCGc -3'
miRNA:   3'- -CGGCCGG-CGagaaCCGU-GCGgUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 20954 0.67 0.35225
Target:  5'- -aCGGCCGCgcgCUgucGGaCAuCGCCGAcGCGg -3'
miRNA:   3'- cgGCCGGCGa--GAa--CC-GU-GCGGUU-CGC- -5'
24154 3' -60.2 NC_005263.2 + 17393 0.67 0.35225
Target:  5'- uGCCGG-CGCggcc-GCGCGCCuGGCGg -3'
miRNA:   3'- -CGGCCgGCGagaacCGUGCGGuUCGC- -5'
24154 3' -60.2 NC_005263.2 + 36083 0.67 0.344067
Target:  5'- aCCGG-CGCaagCUUGaGCGCGCCGucGCGu -3'
miRNA:   3'- cGGCCgGCGa--GAAC-CGUGCGGUu-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.