miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24155 3' -55.4 NC_005263.2 + 32149 0.66 0.699723
Target:  5'- aAUCGCGGCGGUuCGGcCGUu----- -3'
miRNA:   3'- cUAGCGCCGCCGuGCCuGCAcaaacu -5'
24155 3' -55.4 NC_005263.2 + 39091 0.66 0.688816
Target:  5'- cGUCGC-GCGGCACgaaaauccugugGGACGUGg---- -3'
miRNA:   3'- cUAGCGcCGCCGUG------------CCUGCACaaacu -5'
24155 3' -55.4 NC_005263.2 + 38681 0.66 0.666848
Target:  5'- uGAUCGgcccgGGCGGCACGGGCa------- -3'
miRNA:   3'- -CUAGCg----CCGCCGUGCCUGcacaaacu -5'
24155 3' -55.4 NC_005263.2 + 2754 0.66 0.666848
Target:  5'- aGAUCGCGGCcGCcgugcCGGuCGUGUUc-- -3'
miRNA:   3'- -CUAGCGCCGcCGu----GCCuGCACAAacu -5'
24155 3' -55.4 NC_005263.2 + 39529 0.66 0.666848
Target:  5'- aGcgCGCGGCGuaACGGACGa------ -3'
miRNA:   3'- -CuaGCGCCGCcgUGCCUGCacaaacu -5'
24155 3' -55.4 NC_005263.2 + 3307 0.66 0.655809
Target:  5'- uGcgCGCGGCGGCGC--GCGg--UUGAa -3'
miRNA:   3'- -CuaGCGCCGCCGUGccUGCacaAACU- -5'
24155 3' -55.4 NC_005263.2 + 22528 0.66 0.644748
Target:  5'- cGAUCaGCgugacgGGCGGCGCGGACGc------ -3'
miRNA:   3'- -CUAG-CG------CCGCCGUGCCUGCacaaacu -5'
24155 3' -55.4 NC_005263.2 + 17036 0.67 0.611535
Target:  5'- uGUCGCaGCGGCugGuGGCGgcg-UGAa -3'
miRNA:   3'- cUAGCGcCGCCGugC-CUGCacaaACU- -5'
24155 3' -55.4 NC_005263.2 + 39031 0.68 0.578483
Target:  5'- cGGUCGCGcuguuCGGCACGGGCGa------ -3'
miRNA:   3'- -CUAGCGCc----GCCGUGCCUGCacaaacu -5'
24155 3' -55.4 NC_005263.2 + 18759 0.68 0.556658
Target:  5'- cGAUCGUaGGCGGCGCGGugcucGCGcugGUUa-- -3'
miRNA:   3'- -CUAGCG-CCGCCGUGCC-----UGCa--CAAacu -5'
24155 3' -55.4 NC_005263.2 + 25019 0.7 0.413545
Target:  5'- cGGUgGCGGUGGCuGCGGugGCGUGUa--- -3'
miRNA:   3'- -CUAgCGCCGCCG-UGCC--UGCACAaacu -5'
24155 3' -55.4 NC_005263.2 + 18703 0.7 0.413545
Target:  5'- --gCGCGGCaGGCGCGGGCGg------ -3'
miRNA:   3'- cuaGCGCCG-CCGUGCCUGCacaaacu -5'
24155 3' -55.4 NC_005263.2 + 6245 0.71 0.404189
Target:  5'- -cUCGCGGCcaGGCGCGGuCGUGc---- -3'
miRNA:   3'- cuAGCGCCG--CCGUGCCuGCACaaacu -5'
24155 3' -55.4 NC_005263.2 + 21194 0.73 0.302896
Target:  5'- --aCGCGcGCGGCGCGGGCGagUGggUGc -3'
miRNA:   3'- cuaGCGC-CGCCGUGCCUGC--ACaaACu -5'
24155 3' -55.4 NC_005263.2 + 24544 0.74 0.266844
Target:  5'- ---gGCGGCGGCGCGGGCGg------ -3'
miRNA:   3'- cuagCGCCGCCGUGCCUGCacaaacu -5'
24155 3' -55.4 NC_005263.2 + 32042 1.09 0.000902
Target:  5'- cGAUCGCGGCGGCACGGACGUGUUUGAc -3'
miRNA:   3'- -CUAGCGCCGCCGUGCCUGCACAAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.