miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24155 5' -55.1 NC_005263.2 + 27397 0.67 0.630299
Target:  5'- cGCUgAcCGGC-UGCGUCACGacCGGCGc -3'
miRNA:   3'- -CGAgU-GUUGcACGCAGUGCacGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 15703 0.67 0.630299
Target:  5'- aGCUCGCAGCGacuacggGCGguUCGaccaGcGCGGCGu -3'
miRNA:   3'- -CGAGUGUUGCa------CGC--AGUg---CaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 13079 0.67 0.619257
Target:  5'- cGCUUGCA--GUGCGUCGaggcCGgacaGCGGCGu -3'
miRNA:   3'- -CGAGUGUugCACGCAGU----GCa---CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 4528 0.67 0.619257
Target:  5'- uCUCuacCGACGUGCGgCGCuGUGCcgacGGCGg -3'
miRNA:   3'- cGAGu--GUUGCACGCaGUG-CACG----CCGC- -5'
24155 5' -55.1 NC_005263.2 + 41351 0.67 0.618154
Target:  5'- aGCUCGCccggcgcgcgaugGACGUGaCGcgcgagugugUACGUGUGGCGc -3'
miRNA:   3'- -CGAGUG-------------UUGCAC-GCa---------GUGCACGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 28421 0.68 0.608227
Target:  5'- cGCcggCACGcGCGUGaaCGUCGCGggcagcGCGGCGu -3'
miRNA:   3'- -CGa--GUGU-UGCAC--GCAGUGCa-----CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 19682 0.68 0.608227
Target:  5'- uGCcCGCGACGUucaCG-CGCGUGCcGGCGc -3'
miRNA:   3'- -CGaGUGUUGCAc--GCaGUGCACG-CCGC- -5'
24155 5' -55.1 NC_005263.2 + 9783 0.68 0.597218
Target:  5'- -aUCGCAccgaACGgggGCGccucgcCGCGUGCGGCa -3'
miRNA:   3'- cgAGUGU----UGCa--CGCa-----GUGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 11389 0.68 0.597218
Target:  5'- uCUCGCGGCcUGCGcgCACGUgguucgggcGCGGCu -3'
miRNA:   3'- cGAGUGUUGcACGCa-GUGCA---------CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 26195 0.68 0.597218
Target:  5'- gGCcgCGCGGCG-GcCG-CGCGaUGCGGCGg -3'
miRNA:   3'- -CGa-GUGUUGCaC-GCaGUGC-ACGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 9818 0.68 0.597218
Target:  5'- uUUUAgGGCGUGCaUCACGUugacgaacggcGCGGCGc -3'
miRNA:   3'- cGAGUgUUGCACGcAGUGCA-----------CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 43220 0.68 0.597218
Target:  5'- -aUCGCAGCGcGCGcuaCAUGgugaGCGGCGg -3'
miRNA:   3'- cgAGUGUUGCaCGCa--GUGCa---CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 37598 0.68 0.595019
Target:  5'- gGCUCggugcACAACGUGCGcuUCgACGgcaagcaccugcGCGGCGa -3'
miRNA:   3'- -CGAG-----UGUUGCACGC--AG-UGCa-----------CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 2858 0.68 0.586239
Target:  5'- aGCgUCGCAGCGUucgcgaacGaCGUCGCa-GCGGCGa -3'
miRNA:   3'- -CG-AGUGUUGCA--------C-GCAGUGcaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 25994 0.69 0.532084
Target:  5'- cGCUUGCAGCGUGCcggcggcagccGUCACGccUGGUGu -3'
miRNA:   3'- -CGAGUGUUGCACG-----------CAGUGCacGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 18936 0.69 0.51091
Target:  5'- cGUUCugaacCGACGccCGcCACGUGCGGCGu -3'
miRNA:   3'- -CGAGu----GUUGCacGCaGUGCACGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 24538 0.7 0.490095
Target:  5'- ---gGCAACGgcgGCGgCGCGgGCGGCGg -3'
miRNA:   3'- cgagUGUUGCa--CGCaGUGCaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 16361 0.7 0.469684
Target:  5'- aGCgCGCGGCc-GCGUCGCucgGCGGCGg -3'
miRNA:   3'- -CGaGUGUUGcaCGCAGUGca-CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 29698 0.7 0.459642
Target:  5'- gGCgUCAgGAuCGUGCGcaccCGCGUGCcGGCGa -3'
miRNA:   3'- -CG-AGUgUU-GCACGCa---GUGCACG-CCGC- -5'
24155 5' -55.1 NC_005263.2 + 19943 0.7 0.449715
Target:  5'- aGCUUcCGACGauuaUGCGcUCGCGUGCucGGCGc -3'
miRNA:   3'- -CGAGuGUUGC----ACGC-AGUGCACG--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.