miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 3' -54.6 NC_005263.2 + 9527 0.66 0.719524
Target:  5'- cGCCGUGAGCGcgucggacggcaACGCGUCGCacaggucGACa -3'
miRNA:   3'- -UGGCGCUUGC------------UGCGCGGUGaaa----CUGc -5'
24160 3' -54.6 NC_005263.2 + 37224 0.66 0.719524
Target:  5'- cGCCGCucACGACGCGCgC-CggUGcCGa -3'
miRNA:   3'- -UGGCGcuUGCUGCGCG-GuGaaACuGC- -5'
24160 3' -54.6 NC_005263.2 + 35730 0.66 0.718449
Target:  5'- gACgGCGAgacgccggaagaaGCGGCGCGgCGCga-GACGc -3'
miRNA:   3'- -UGgCGCU-------------UGCUGCGCgGUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 2870 0.66 0.70874
Target:  5'- uUCGCGAACGACGuCGCaGC---GGCGa -3'
miRNA:   3'- uGGCGCUUGCUGC-GCGgUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 38642 0.66 0.70874
Target:  5'- aGCUGC-AGCcgGGCGCGCCGCUgcccGugGu -3'
miRNA:   3'- -UGGCGcUUG--CUGCGCGGUGAaa--CugC- -5'
24160 3' -54.6 NC_005263.2 + 9415 0.66 0.70874
Target:  5'- uAUCGCGGcuGCGGCGCuguuaGCCGCgcaccuugaucUUGGCGa -3'
miRNA:   3'- -UGGCGCU--UGCUGCG-----CGGUGa----------AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 8015 0.66 0.70874
Target:  5'- cGCCGuCGAuuuugaugucuuGCGAgGCGuCCGCgccgUGGCGc -3'
miRNA:   3'- -UGGC-GCU------------UGCUgCGC-GGUGaa--ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 41493 0.66 0.70874
Target:  5'- gACCGCGc-CGAgCGCGCCGCcgaacGCGa -3'
miRNA:   3'- -UGGCGCuuGCU-GCGCGGUGaaac-UGC- -5'
24160 3' -54.6 NC_005263.2 + 30533 0.66 0.70874
Target:  5'- -gCGCGAGCagcucGAUGCGCUGCUc-GACGu -3'
miRNA:   3'- ugGCGCUUG-----CUGCGCGGUGAaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 46482 0.67 0.69788
Target:  5'- cGCCGCcGACGACGCGUUcgACccgGAUGc -3'
miRNA:   3'- -UGGCGcUUGCUGCGCGG--UGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 37920 0.67 0.69788
Target:  5'- aACaGCGGGCGcagGCGCGCCGCc--GGCa -3'
miRNA:   3'- -UGgCGCUUGC---UGCGCGGUGaaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 9905 0.67 0.69788
Target:  5'- cAUCGCGAGCGGUGUGCCGagaucGGCa -3'
miRNA:   3'- -UGGCGCUUGCUGCGCGGUgaaa-CUGc -5'
24160 3' -54.6 NC_005263.2 + 1417 0.67 0.686954
Target:  5'- gUCGUcGGCG-CGCGCCGCcUUGGCu -3'
miRNA:   3'- uGGCGcUUGCuGCGCGGUGaAACUGc -5'
24160 3' -54.6 NC_005263.2 + 28717 0.67 0.686954
Target:  5'- uGCCGU--ACuGCGCGCCGCcgaggcUGACGg -3'
miRNA:   3'- -UGGCGcuUGcUGCGCGGUGaa----ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 3200 0.67 0.686954
Target:  5'- gGCCgGUGAGCcggcccGGCGCGCCGCccgccccgaUGACGc -3'
miRNA:   3'- -UGG-CGCUUG------CUGCGCGGUGaa-------ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 45850 0.67 0.686954
Target:  5'- gGCCgaGCGcGCGGCGCGCUAC---GGCa -3'
miRNA:   3'- -UGG--CGCuUGCUGCGCGGUGaaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 38636 0.67 0.686954
Target:  5'- -gCGCGAAUGAagcCGCGUCGCgcaucGACGc -3'
miRNA:   3'- ugGCGCUUGCU---GCGCGGUGaaa--CUGC- -5'
24160 3' -54.6 NC_005263.2 + 35978 0.67 0.685859
Target:  5'- gACCGCcugGAGCGcgcguaauggcgcGCGCGCCGCUgc-GCa -3'
miRNA:   3'- -UGGCG---CUUGC-------------UGCGCGGUGAaacUGc -5'
24160 3' -54.6 NC_005263.2 + 35434 0.67 0.675977
Target:  5'- -aCGCGAACGacgaccccgGCGCGCCGgcc-GACGa -3'
miRNA:   3'- ugGCGCUUGC---------UGCGCGGUgaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 15589 0.67 0.675977
Target:  5'- cGCCGCGuuCGACGUGCUggcGCUUaucGCGu -3'
miRNA:   3'- -UGGCGCuuGCUGCGCGG---UGAAac-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.