miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 5' -58.5 NC_005263.2 + 9998 0.66 0.51731
Target:  5'- -uCGCCG-UCuUGCGCGCCaggUGCGGg -3'
miRNA:   3'- gcGCGGCuAG-ACGCGCGGcaaGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 17751 0.66 0.51731
Target:  5'- gGCGCCGGcggCaGCGCGgCCGcgCuCGGc -3'
miRNA:   3'- gCGCGGCUa--GaCGCGC-GGCaaGuGCC- -5'
24160 5' -58.5 NC_005263.2 + 1966 0.66 0.514238
Target:  5'- cCGCGUCGAUCugcugcaguUGCGaguucguagcgucaCGCCGg-CGCGGa -3'
miRNA:   3'- -GCGCGGCUAG---------ACGC--------------GCGGCaaGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 28707 0.67 0.507101
Target:  5'- aCGCGCgCGuugccguaCUGCGCGCCGccgaggcUgACGGc -3'
miRNA:   3'- -GCGCG-GCua------GACGCGCGGCa------AgUGCC- -5'
24160 5' -58.5 NC_005263.2 + 44374 0.67 0.507101
Target:  5'- aCGCGCUGAUCcgGCcCGgCGUgCGCGa -3'
miRNA:   3'- -GCGCGGCUAGa-CGcGCgGCAaGUGCc -5'
24160 5' -58.5 NC_005263.2 + 20162 0.67 0.507101
Target:  5'- cCGCGCCGuccggCUcaucgacgacgaGCGCGCCGggCgACGc -3'
miRNA:   3'- -GCGCGGCua---GA------------CGCGCGGCaaG-UGCc -5'
24160 5' -58.5 NC_005263.2 + 18287 0.67 0.496979
Target:  5'- uGCGCUcGUCgUGCGCGCUGcaUCGCa- -3'
miRNA:   3'- gCGCGGcUAG-ACGCGCGGCa-AGUGcc -5'
24160 5' -58.5 NC_005263.2 + 39673 0.67 0.496979
Target:  5'- aGCgGCCGA-CUGC-UGCCGgacgcgaacUUCACGGu -3'
miRNA:   3'- gCG-CGGCUaGACGcGCGGC---------AAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 21906 0.67 0.486949
Target:  5'- gGcCGCCGcAUC-GCGCgGCCGccgCGCGGc -3'
miRNA:   3'- gC-GCGGC-UAGaCGCG-CGGCaa-GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 25701 0.67 0.486949
Target:  5'- gGCGagcaCGG-CgGCGCGUaCGUUCGCGGc -3'
miRNA:   3'- gCGCg---GCUaGaCGCGCG-GCAAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 20222 0.67 0.486949
Target:  5'- uGC-CCGA-CUGCGCGCCGc---CGGc -3'
miRNA:   3'- gCGcGGCUaGACGCGCGGCaaguGCC- -5'
24160 5' -58.5 NC_005263.2 + 32619 0.67 0.486949
Target:  5'- gGUGCUGAUgCUcaccGCGcCGCCGcagCACGGc -3'
miRNA:   3'- gCGCGGCUA-GA----CGC-GCGGCaa-GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 19045 0.67 0.486949
Target:  5'- gCGCGCCGcccCgagGaCGCGCCG--CGCGGc -3'
miRNA:   3'- -GCGCGGCua-Ga--C-GCGCGGCaaGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 9765 0.67 0.486949
Target:  5'- -uCGCCGGUCgccGCGUGCaCGgUCGCGc -3'
miRNA:   3'- gcGCGGCUAGa--CGCGCG-GCaAGUGCc -5'
24160 5' -58.5 NC_005263.2 + 23402 0.67 0.486949
Target:  5'- uGCGCCGcccggcacguUCgGCGCGCCGccgUUAcCGGc -3'
miRNA:   3'- gCGCGGCu---------AGaCGCGCGGCa--AGU-GCC- -5'
24160 5' -58.5 NC_005263.2 + 27520 0.67 0.486949
Target:  5'- --aGCCGGUCgcgGUGC-CCGUcggCACGGc -3'
miRNA:   3'- gcgCGGCUAGa--CGCGcGGCAa--GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 29758 0.67 0.477015
Target:  5'- uGCGCCGGguUCUgcggguucagcaGCGUGCCGUcgGCGu -3'
miRNA:   3'- gCGCGGCU--AGA------------CGCGCGGCAagUGCc -5'
24160 5' -58.5 NC_005263.2 + 15644 0.67 0.477015
Target:  5'- cCGaCGCCGAUCUaCGCGaUCG-UCGCGu -3'
miRNA:   3'- -GC-GCGGCUAGAcGCGC-GGCaAGUGCc -5'
24160 5' -58.5 NC_005263.2 + 17506 0.67 0.477015
Target:  5'- gCGCGUCGAUCgaucagGCgGCGgCuaUCACGGc -3'
miRNA:   3'- -GCGCGGCUAGa-----CG-CGCgGcaAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 1277 0.67 0.477015
Target:  5'- gCGCGCCGccugGCGCGCguugCGUUaCGCGa -3'
miRNA:   3'- -GCGCGGCuagaCGCGCG----GCAA-GUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.