Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24164 | 3' | -53.8 | NC_005263.2 | + | 32136 | 0.66 | 0.777343 |
Target: 5'- aGAGCaUGUUCGAGCccuuguccgcccGCG-UGUCGuGCGAc -3' miRNA: 3'- -CUUG-ACGAGCUCG------------CGCuACAGC-UGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 15780 | 0.66 | 0.777343 |
Target: 5'- cAGCUGCUCGAcgaccacuGCGCGcUGcUCGucCGAc -3' miRNA: 3'- cUUGACGAGCU--------CGCGCuAC-AGCu-GCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 19826 | 0.66 | 0.777343 |
Target: 5'- -uACUGCacaaggugagUCGcGCGCGA--UCGACGAu -3' miRNA: 3'- cuUGACG----------AGCuCGCGCUacAGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 10063 | 0.66 | 0.777343 |
Target: 5'- -cGCUGCaugCGccuGCGCGuuuUGcUCGACGAg -3' miRNA: 3'- cuUGACGa--GCu--CGCGCu--AC-AGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 44650 | 0.65 | 0.786445 |
Target: 5'- cGAGCUGCgccUCGAuGCGUcgcgcgcgccgaaGAaGUCGGCGGc -3' miRNA: 3'- -CUUGACG---AGCU-CGCG-------------CUaCAGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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