miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24164 3' -53.8 NC_005263.2 + 30243 0.67 0.680833
Target:  5'- -cGCgGCgaagCGuGCGCGGUagucGUCGGCGAa -3'
miRNA:   3'- cuUGaCGa---GCuCGCGCUA----CAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 29561 0.69 0.568148
Target:  5'- cGGGCUGCgCGAacuucuugaacgcGCucGCGGUGUCGACGc -3'
miRNA:   3'- -CUUGACGaGCU-------------CG--CGCUACAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 28635 0.71 0.451557
Target:  5'- -uACUGCUCGAGCGCcGUG-CGgaacgccGCGAg -3'
miRNA:   3'- cuUGACGAGCUCGCGcUACaGC-------UGCU- -5'
24164 3' -53.8 NC_005263.2 + 28495 1.09 0.001245
Target:  5'- uGAACUGCUCGAGCGCGAUGUCGACGAa -3'
miRNA:   3'- -CUUGACGAGCUCGCGCUACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 25551 0.71 0.493661
Target:  5'- cGAGUUGaucgCGAGCGCGAcGUCGGCGu -3'
miRNA:   3'- -CUUGACga--GCUCGCGCUaCAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 24689 0.7 0.547275
Target:  5'- cGAGC-GCaUGAGCGCGuUGaUCGACGGg -3'
miRNA:   3'- -CUUGaCGaGCUCGCGCuAC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 24300 0.68 0.658553
Target:  5'- cGAGCgauugGCUCGcGCGCGucgcaUCGGCGGu -3'
miRNA:   3'- -CUUGa----CGAGCuCGCGCuac--AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 24086 0.68 0.658553
Target:  5'- cAGCUGC-CGAGCGCG---UCGGCa- -3'
miRNA:   3'- cUUGACGaGCUCGCGCuacAGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 22051 0.68 0.669712
Target:  5'- cAGCaGCUCGAcGCaGCGAaGcUCGACGAg -3'
miRNA:   3'- cUUGaCGAGCU-CG-CGCUaC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 19826 0.66 0.777343
Target:  5'- -uACUGCacaaggugagUCGcGCGCGA--UCGACGAu -3'
miRNA:   3'- cuUGACG----------AGCuCGCGCUacAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 18941 0.68 0.658553
Target:  5'- cGAGC-GCUCGAGCGCGccgGUuCGAgCGc -3'
miRNA:   3'- -CUUGaCGAGCUCGCGCua-CA-GCU-GCu -5'
24164 3' -53.8 NC_005263.2 + 17585 0.74 0.325227
Target:  5'- cGAGCUGCUCGcGCaGCGggGUC-ACGAc -3'
miRNA:   3'- -CUUGACGAGCuCG-CGCuaCAGcUGCU- -5'
24164 3' -53.8 NC_005263.2 + 15780 0.66 0.777343
Target:  5'- cAGCUGCUCGAcgaccacuGCGCGcUGcUCGucCGAc -3'
miRNA:   3'- cUUGACGAGCU--------CGCGCuAC-AGCu-GCU- -5'
24164 3' -53.8 NC_005263.2 + 15315 0.68 0.636171
Target:  5'- cGAGCUGCgCGAgGCGCGG-GcCGACa- -3'
miRNA:   3'- -CUUGACGaGCU-CGCGCUaCaGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 13056 0.66 0.776324
Target:  5'- uGAugUGCUCGguuucacgGGCGUgucugccGGUGUCgGACGGc -3'
miRNA:   3'- -CUugACGAGC--------UCGCG-------CUACAG-CUGCU- -5'
24164 3' -53.8 NC_005263.2 + 11514 0.7 0.547275
Target:  5'- -cACUGgUCGcGCGCGAUGaaGGCGGc -3'
miRNA:   3'- cuUGACgAGCuCGCGCUACagCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 10063 0.66 0.777343
Target:  5'- -cGCUGCaugCGccuGCGCGuuuUGcUCGACGAg -3'
miRNA:   3'- cuUGACGa--GCu--CGCGCu--AC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 9655 0.66 0.735486
Target:  5'- -cGCUG-UCGAGCGCaAUGUCGccgcCGAg -3'
miRNA:   3'- cuUGACgAGCUCGCGcUACAGCu---GCU- -5'
24164 3' -53.8 NC_005263.2 + 7015 0.7 0.536386
Target:  5'- cGGAUUGg-CG-GCGCGAaacgUGUCGACGAu -3'
miRNA:   3'- -CUUGACgaGCuCGCGCU----ACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 6202 0.69 0.569253
Target:  5'- cGGGCUGCUCGGGCGa---GUUGAuCGGa -3'
miRNA:   3'- -CUUGACGAGCUCGCgcuaCAGCU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.