miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24164 5' -59.5 NC_005263.2 + 44895 0.66 0.438605
Target:  5'- aUCGGggcgggCGGCgGCCGGGC-CG-GCUc -3'
miRNA:   3'- aAGCCaa----GCUG-CGGCCCGaGCuCGAa -5'
24164 5' -59.5 NC_005263.2 + 16583 0.66 0.391881
Target:  5'- -cCGGcggCGAcgcguuCGCCGGGCUCGcGCg- -3'
miRNA:   3'- aaGCCaa-GCU------GCGGCCCGAGCuCGaa -5'
24164 5' -59.5 NC_005263.2 + 25933 0.67 0.374121
Target:  5'- -cCGGUUCGcccgGCGCUGGcGCaaugCGAGCg- -3'
miRNA:   3'- aaGCCAAGC----UGCGGCC-CGa---GCUCGaa -5'
24164 5' -59.5 NC_005263.2 + 33048 0.67 0.365447
Target:  5'- cUCGG-UCGACaGCaCGGuuUCGAGCUg -3'
miRNA:   3'- aAGCCaAGCUG-CG-GCCcgAGCUCGAa -5'
24164 5' -59.5 NC_005263.2 + 27537 0.67 0.356914
Target:  5'- gUCGGcaCGGCcggcagGCCGGGCaCGAGCg- -3'
miRNA:   3'- aAGCCaaGCUG------CGGCCCGaGCUCGaa -5'
24164 5' -59.5 NC_005263.2 + 14037 0.68 0.308694
Target:  5'- -aCGGUUCGGC-CaCGGGCgccgcgUCGAGCg- -3'
miRNA:   3'- aaGCCAAGCUGcG-GCCCG------AGCUCGaa -5'
24164 5' -59.5 NC_005263.2 + 14166 0.68 0.293765
Target:  5'- cUUCGGgcCGGCgGCCGGuGUgcgCGAGCUg -3'
miRNA:   3'- -AAGCCaaGCUG-CGGCC-CGa--GCUCGAa -5'
24164 5' -59.5 NC_005263.2 + 26523 0.69 0.279404
Target:  5'- -gCGGcgUCGACGCCGG-CggCGAGCa- -3'
miRNA:   3'- aaGCCa-AGCUGCGGCCcGa-GCUCGaa -5'
24164 5' -59.5 NC_005263.2 + 16423 0.7 0.233533
Target:  5'- cUCGGcgUCGGCGCUGGcGCggCGGGCc- -3'
miRNA:   3'- aAGCCa-AGCUGCGGCC-CGa-GCUCGaa -5'
24164 5' -59.5 NC_005263.2 + 43065 0.7 0.221643
Target:  5'- gUCGGccaauagUCGGcCGCCGGGCcggcugUCGAGCg- -3'
miRNA:   3'- aAGCCa------AGCU-GCGGCCCG------AGCUCGaa -5'
24164 5' -59.5 NC_005263.2 + 24037 0.71 0.199409
Target:  5'- aUCGG-UCGACGuguCCGGGUUCGcGCUg -3'
miRNA:   3'- aAGCCaAGCUGC---GGCCCGAGCuCGAa -5'
24164 5' -59.5 NC_005263.2 + 31258 0.72 0.179142
Target:  5'- -gCGGcgCGGCGCCGGGCaggUCGAaguGCUg -3'
miRNA:   3'- aaGCCaaGCUGCGGCCCG---AGCU---CGAa -5'
24164 5' -59.5 NC_005263.2 + 2643 0.76 0.079797
Target:  5'- aUCGGcacgUUCG-CGCCGGGCUCGAGgUg -3'
miRNA:   3'- aAGCC----AAGCuGCGGCCCGAGCUCgAa -5'
24164 5' -59.5 NC_005263.2 + 28529 1.02 0.000895
Target:  5'- cUUCGGUUCGACGCCGGGCUCGAGCUUc -3'
miRNA:   3'- -AAGCCAAGCUGCGGCCCGAGCUCGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.