Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 2643 | 0.76 | 0.079797 |
Target: 5'- aUCGGcacgUUCG-CGCCGGGCUCGAGgUg -3' miRNA: 3'- aAGCC----AAGCuGCGGCCCGAGCUCgAa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 14037 | 0.68 | 0.308694 |
Target: 5'- -aCGGUUCGGC-CaCGGGCgccgcgUCGAGCg- -3' miRNA: 3'- aaGCCAAGCUGcG-GCCCG------AGCUCGaa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 14166 | 0.68 | 0.293765 |
Target: 5'- cUUCGGgcCGGCgGCCGGuGUgcgCGAGCUg -3' miRNA: 3'- -AAGCCaaGCUG-CGGCC-CGa--GCUCGAa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 16423 | 0.7 | 0.233533 |
Target: 5'- cUCGGcgUCGGCGCUGGcGCggCGGGCc- -3' miRNA: 3'- aAGCCa-AGCUGCGGCC-CGa-GCUCGaa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 16583 | 0.66 | 0.391881 |
Target: 5'- -cCGGcggCGAcgcguuCGCCGGGCUCGcGCg- -3' miRNA: 3'- aaGCCaa-GCU------GCGGCCCGAGCuCGaa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 24037 | 0.71 | 0.199409 |
Target: 5'- aUCGG-UCGACGuguCCGGGUUCGcGCUg -3' miRNA: 3'- aAGCCaAGCUGC---GGCCCGAGCuCGAa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 25933 | 0.67 | 0.374121 |
Target: 5'- -cCGGUUCGcccgGCGCUGGcGCaaugCGAGCg- -3' miRNA: 3'- aaGCCAAGC----UGCGGCC-CGa---GCUCGaa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 26523 | 0.69 | 0.279404 |
Target: 5'- -gCGGcgUCGACGCCGG-CggCGAGCa- -3' miRNA: 3'- aaGCCa-AGCUGCGGCCcGa-GCUCGaa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 27537 | 0.67 | 0.356914 |
Target: 5'- gUCGGcaCGGCcggcagGCCGGGCaCGAGCg- -3' miRNA: 3'- aAGCCaaGCUG------CGGCCCGaGCUCGaa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 28529 | 1.02 | 0.000895 |
Target: 5'- cUUCGGUUCGACGCCGGGCUCGAGCUUc -3' miRNA: 3'- -AAGCCAAGCUGCGGCCCGAGCUCGAA- -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 31258 | 0.72 | 0.179142 |
Target: 5'- -gCGGcgCGGCGCCGGGCaggUCGAaguGCUg -3' miRNA: 3'- aaGCCaaGCUGCGGCCCG---AGCU---CGAa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 33048 | 0.67 | 0.365447 |
Target: 5'- cUCGG-UCGACaGCaCGGuuUCGAGCUg -3' miRNA: 3'- aAGCCaAGCUG-CG-GCCcgAGCUCGAa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 43065 | 0.7 | 0.221643 |
Target: 5'- gUCGGccaauagUCGGcCGCCGGGCcggcugUCGAGCg- -3' miRNA: 3'- aAGCCa------AGCU-GCGGCCCG------AGCUCGaa -5' |
|||||||
24164 | 5' | -59.5 | NC_005263.2 | + | 44895 | 0.66 | 0.438605 |
Target: 5'- aUCGGggcgggCGGCgGCCGGGC-CG-GCUc -3' miRNA: 3'- aAGCCaa----GCUG-CGGCCCGaGCuCGAa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home