miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24165 3' -57.2 NC_005263.2 + 42017 0.66 0.575298
Target:  5'- gCAgUGCGGCCGgcCGcGCCaaGGCUUCc- -3'
miRNA:   3'- -GUgACGCCGGU--GC-CGGaaCUGAAGca -5'
24165 3' -57.2 NC_005263.2 + 22510 0.66 0.575298
Target:  5'- gGCgguucgGCGGCUGCGGCCU--GCU-CGa -3'
miRNA:   3'- gUGa-----CGCCGGUGCCGGAacUGAaGCa -5'
24165 3' -57.2 NC_005263.2 + 10180 0.66 0.575298
Target:  5'- gGCUGcCGGCgGCGcGCCUgcgcccGGCUguUCGUu -3'
miRNA:   3'- gUGAC-GCCGgUGC-CGGAa-----CUGA--AGCA- -5'
24165 3' -57.2 NC_005263.2 + 43171 0.66 0.564404
Target:  5'- gGCgUGCGG-CACaGCCUgaucuaUGACUUCGa -3'
miRNA:   3'- gUG-ACGCCgGUGcCGGA------ACUGAAGCa -5'
24165 3' -57.2 NC_005263.2 + 31529 0.66 0.564404
Target:  5'- gGCgaacGCGucGCCGcCGGCCUUGGCgUCGc -3'
miRNA:   3'- gUGa---CGC--CGGU-GCCGGAACUGaAGCa -5'
24165 3' -57.2 NC_005263.2 + 30635 0.66 0.564404
Target:  5'- uGCUGC-GCCGgcCGGCgUUGACgUCGa -3'
miRNA:   3'- gUGACGcCGGU--GCCGgAACUGaAGCa -5'
24165 3' -57.2 NC_005263.2 + 15263 0.66 0.553566
Target:  5'- uGCUGCGGCUugucGCGGCgCUgaagGGCgcCGa -3'
miRNA:   3'- gUGACGCCGG----UGCCG-GAa---CUGaaGCa -5'
24165 3' -57.2 NC_005263.2 + 32990 0.66 0.54279
Target:  5'- gCGCUGCGuauucGCgCGCGGCCUcGACgUUGa -3'
miRNA:   3'- -GUGACGC-----CG-GUGCCGGAaCUGaAGCa -5'
24165 3' -57.2 NC_005263.2 + 37543 0.67 0.490095
Target:  5'- gGCcGcCGGCCACGGCCacgUGAagaucagUCGUu -3'
miRNA:   3'- gUGaC-GCCGGUGCCGGa--ACUga-----AGCA- -5'
24165 3' -57.2 NC_005263.2 + 20227 0.69 0.39187
Target:  5'- gACUGCGcGCCGcCGGCCUuauccacUGAUUcCGUc -3'
miRNA:   3'- gUGACGC-CGGU-GCCGGA-------ACUGAaGCA- -5'
24165 3' -57.2 NC_005263.2 + 17397 0.69 0.366121
Target:  5'- gGC-GCGGCCGCGcGCCUggcgGGCggugUCGc -3'
miRNA:   3'- gUGaCGCCGGUGC-CGGAa---CUGa---AGCa -5'
24165 3' -57.2 NC_005263.2 + 5677 0.7 0.316651
Target:  5'- gACUGCGGCCAUGugcagggcuCCUUGACUU-GUg -3'
miRNA:   3'- gUGACGCCGGUGCc--------GGAACUGAAgCA- -5'
24165 3' -57.2 NC_005263.2 + 46100 0.71 0.286567
Target:  5'- cCGCUGCGGauuuggCGCGGCCUagGACagUCGg -3'
miRNA:   3'- -GUGACGCCg-----GUGCCGGAa-CUGa-AGCa -5'
24165 3' -57.2 NC_005263.2 + 8069 0.71 0.27239
Target:  5'- gGCUGCGGCCGacaGGCCguauUGG-UUCGUc -3'
miRNA:   3'- gUGACGCCGGUg--CCGGa---ACUgAAGCA- -5'
24165 3' -57.2 NC_005263.2 + 14136 0.73 0.198923
Target:  5'- cCGCaGCGGCCagcGCGGCCgccuuggcGACUUCGg -3'
miRNA:   3'- -GUGaCGCCGG---UGCCGGaa------CUGAAGCa -5'
24165 3' -57.2 NC_005263.2 + 27475 1.06 0.000785
Target:  5'- cCACUGCGGCCACGGCCUUGACUUCGUu -3'
miRNA:   3'- -GUGACGCCGGUGCCGGAACUGAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.