miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24165 5' -60 NC_005263.2 + 1444 0.66 0.467183
Target:  5'- gCGCGAGGCU--UCGCGGcGCUCG-Cg -3'
miRNA:   3'- aGUGCUUCGGccAGCGCCaCGGGCaG- -5'
24165 5' -60 NC_005263.2 + 45335 0.66 0.457457
Target:  5'- gUCGCGAggucgugaugccGGUCGGUCGCGacuucUGCUCG-Ca -3'
miRNA:   3'- -AGUGCU------------UCGGCCAGCGCc----ACGGGCaG- -5'
24165 5' -60 NC_005263.2 + 25697 0.66 0.44784
Target:  5'- aCACGGcgAGCaCGGcggcgcguacguUCGCGGccUGCCCGa- -3'
miRNA:   3'- aGUGCU--UCG-GCC------------AGCGCC--ACGGGCag -5'
24165 5' -60 NC_005263.2 + 27944 0.66 0.44784
Target:  5'- cUCGuCGAugAGCCGGacggCGCGGaugGCCCa-- -3'
miRNA:   3'- -AGU-GCU--UCGGCCa---GCGCCa--CGGGcag -5'
24165 5' -60 NC_005263.2 + 47162 0.66 0.446884
Target:  5'- cUACGucGCCGcUCGCgGGUGCCaacccguucgaugCGUCg -3'
miRNA:   3'- aGUGCuuCGGCcAGCG-CCACGG-------------GCAG- -5'
24165 5' -60 NC_005263.2 + 25495 0.66 0.438336
Target:  5'- aUCACGGucaCGGUCGUcGUGCCCu-- -3'
miRNA:   3'- -AGUGCUucgGCCAGCGcCACGGGcag -5'
24165 5' -60 NC_005263.2 + 30193 0.66 0.418761
Target:  5'- gUCACGggGCCguugaugcugaucGG-CGCGccGCCgGUCg -3'
miRNA:   3'- -AGUGCuuCGG-------------CCaGCGCcaCGGgCAG- -5'
24165 5' -60 NC_005263.2 + 33902 0.67 0.410536
Target:  5'- gCGCGAAcggcacGCC-GUCGCGGaacgcuugUGCCCGaUCg -3'
miRNA:   3'- aGUGCUU------CGGcCAGCGCC--------ACGGGC-AG- -5'
24165 5' -60 NC_005263.2 + 11927 0.67 0.398834
Target:  5'- -aACGAAGCguugaaggucgcacCGGUCGCGcaGgCCGUCg -3'
miRNA:   3'- agUGCUUCG--------------GCCAGCGCcaCgGGCAG- -5'
24165 5' -60 NC_005263.2 + 14687 0.67 0.392622
Target:  5'- aCACGAAGUCGGaCGCc-UGgCCGUCc -3'
miRNA:   3'- aGUGCUUCGGCCaGCGccACgGGCAG- -5'
24165 5' -60 NC_005263.2 + 39010 0.67 0.389101
Target:  5'- aCACGAuccagccggguauGCCGGUCGCGcUGUUCGg- -3'
miRNA:   3'- aGUGCUu------------CGGCCAGCGCcACGGGCag -5'
24165 5' -60 NC_005263.2 + 4645 0.67 0.387348
Target:  5'- aUCGCGAucauggcgacgggcaGGCCGGcgCGCGG-GUcuuUCGUCa -3'
miRNA:   3'- -AGUGCU---------------UCGGCCa-GCGCCaCG---GGCAG- -5'
24165 5' -60 NC_005263.2 + 7657 0.67 0.383858
Target:  5'- ---aGGAGUgGcGUUGCGGccuuUGCCCGUCu -3'
miRNA:   3'- agugCUUCGgC-CAGCGCC----ACGGGCAG- -5'
24165 5' -60 NC_005263.2 + 44951 0.67 0.366723
Target:  5'- cCACGAAGcCCGGcCaC-GUGCUCGUCg -3'
miRNA:   3'- aGUGCUUC-GGCCaGcGcCACGGGCAG- -5'
24165 5' -60 NC_005263.2 + 3159 0.67 0.366723
Target:  5'- gCACGuGGCCGGgcuucguggCGCGGaauaacugccgcUGCgCGUCg -3'
miRNA:   3'- aGUGCuUCGGCCa--------GCGCC------------ACGgGCAG- -5'
24165 5' -60 NC_005263.2 + 32294 0.67 0.366723
Target:  5'- --uCGGAGCCGGUCuugaCGaGUGUCaCGUCg -3'
miRNA:   3'- aguGCUUCGGCCAGc---GC-CACGG-GCAG- -5'
24165 5' -60 NC_005263.2 + 15192 0.68 0.342024
Target:  5'- aUCGaGAAGCCGGUCaGCGG-GCCg--- -3'
miRNA:   3'- -AGUgCUUCGGCCAG-CGCCaCGGgcag -5'
24165 5' -60 NC_005263.2 + 33992 0.68 0.334062
Target:  5'- -gGCGAGGCCGGcCGUGuugGCUgCGUCg -3'
miRNA:   3'- agUGCUUCGGCCaGCGCca-CGG-GCAG- -5'
24165 5' -60 NC_005263.2 + 46160 0.68 0.334062
Target:  5'- aCGCGGuuGCCGGcgUCGcCGGUGCCgG-Cg -3'
miRNA:   3'- aGUGCUu-CGGCC--AGC-GCCACGGgCaG- -5'
24165 5' -60 NC_005263.2 + 25907 0.68 0.318549
Target:  5'- cCGCGAcGUacguaaCGGUCGCGuUGCCgGUCg -3'
miRNA:   3'- aGUGCUuCG------GCCAGCGCcACGGgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.