Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 44805 | 0.68 | 0.33202 |
Target: 5'- cCGCGCGGCCGCGcccaggcaagaaaaCGGCGGacUgCGAg -3' miRNA: 3'- -GCGCGUCGGCGCa-------------GCCGCUacAgGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 28976 | 0.68 | 0.335934 |
Target: 5'- aCGCGCAagcGCCcggcgauGCGcUCGGCGcgG-CCGAc -3' miRNA: 3'- -GCGCGU---CGG-------CGC-AGCCGCuaCaGGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 17763 | 0.68 | 0.328913 |
Target: 5'- aGCGCGGCCGCGcUCGGCa-------- -3' miRNA: 3'- gCGCGUCGGCGC-AGCCGcuacaggcu -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 38564 | 0.68 | 0.321241 |
Target: 5'- cCGCGagcGCCGCGUCGGuCGcUG-CCGc -3' miRNA: 3'- -GCGCgu-CGGCGCAGCC-GCuACaGGCu -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 27378 | 0.68 | 0.313703 |
Target: 5'- gGCGCGGCgGCGgcCGGCGcgcUGaCCGGc -3' miRNA: 3'- gCGCGUCGgCGCa-GCCGCu--ACaGGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 39724 | 0.68 | 0.299031 |
Target: 5'- gGCGCgGGCCGCGUCgaccuGGCGAgcgaaCUGAa -3' miRNA: 3'- gCGCG-UCGGCGCAG-----CCGCUaca--GGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 18610 | 0.67 | 0.360945 |
Target: 5'- aCGcCGCAGCgGCGUucgCGGCaGGUGgcaacCCGGg -3' miRNA: 3'- -GC-GCGUCGgCGCA---GCCG-CUACa----GGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 9526 | 0.67 | 0.360945 |
Target: 5'- uCGUGCGGCCGUGcgCGGCagcGaCCGAc -3' miRNA: 3'- -GCGCGUCGGCGCa-GCCGcuaCaGGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 21916 | 0.67 | 0.360945 |
Target: 5'- uCGCGCGGCCGCcgcgCGGCcgcaGAccGUCCu- -3' miRNA: 3'- -GCGCGUCGGCGca--GCCG----CUa-CAGGcu -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 32744 | 0.67 | 0.352737 |
Target: 5'- aCGCGCuGCCGCuugcgCGGCGcaAUGcgaCCGAc -3' miRNA: 3'- -GCGCGuCGGCGca---GCCGC--UACa--GGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 14072 | 0.67 | 0.377756 |
Target: 5'- aGCGC-GCCGCGcCGGCccAUGUCgGc -3' miRNA: 3'- gCGCGuCGGCGCaGCCGc-UACAGgCu -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 34569 | 0.67 | 0.385491 |
Target: 5'- gGCGCAGCCacggucaGCGUCGcuugauuacucGCGGacgUGUCgGAg -3' miRNA: 3'- gCGCGUCGG-------CGCAGC-----------CGCU---ACAGgCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 14014 | 0.67 | 0.369285 |
Target: 5'- aCGCGCgaGGCgcaGCGaCGGCGAcgGUUCGGc -3' miRNA: 3'- -GCGCG--UCGg--CGCaGCCGCUa-CAGGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 24815 | 0.67 | 0.343862 |
Target: 5'- gCGCGUauucggccuauacGGCCgGCGgcaaCGGCGGUG-CCGGu -3' miRNA: 3'- -GCGCG-------------UCGG-CGCa---GCCGCUACaGGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 9208 | 0.67 | 0.352737 |
Target: 5'- aCGgGCGGCgCuCGUaCGGCGcgcgguacGUGUCCGAc -3' miRNA: 3'- -GCgCGUCG-GcGCA-GCCGC--------UACAGGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 27526 | 0.67 | 0.352737 |
Target: 5'- uCGCGguGCC-CGUCGGCacgG-CCGGc -3' miRNA: 3'- -GCGCguCGGcGCAGCCGcuaCaGGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 40522 | 0.67 | 0.352737 |
Target: 5'- gCGCGUGGcCCGCaUUacaagGGCGAUGUgCGAg -3' miRNA: 3'- -GCGCGUC-GGCGcAG-----CCGCUACAgGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 44669 | 0.67 | 0.377756 |
Target: 5'- uCGCGCGcGCCGaagaaGUCGGCGGccaUCCu- -3' miRNA: 3'- -GCGCGU-CGGCg----CAGCCGCUac-AGGcu -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 33160 | 0.67 | 0.377756 |
Target: 5'- aGCGCGGCgccuugcauCGCGaCGGgGAUGU-CGAg -3' miRNA: 3'- gCGCGUCG---------GCGCaGCCgCUACAgGCU- -5' |
|||||||
24166 | 3' | -60.7 | NC_005263.2 | + | 12179 | 0.67 | 0.369285 |
Target: 5'- -uCGCGGCCGUGUCG-CGAUGaagCgGAu -3' miRNA: 3'- gcGCGUCGGCGCAGCcGCUACa--GgCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home