miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 27378 0.68 0.313703
Target:  5'- gGCGCGGCgGCGgcCGGCGcgcUGaCCGGc -3'
miRNA:   3'- gCGCGUCGgCGCa-GCCGCu--ACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 18906 0.68 0.321241
Target:  5'- aCGCGcCGGCCuGCGUCGaGCG-UGaCCGc -3'
miRNA:   3'- -GCGC-GUCGG-CGCAGC-CGCuACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 38564 0.68 0.321241
Target:  5'- cCGCGagcGCCGCGUCGGuCGcUG-CCGc -3'
miRNA:   3'- -GCGCgu-CGGCGCAGCC-GCuACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 17763 0.68 0.328913
Target:  5'- aGCGCGGCCGCGcUCGGCa-------- -3'
miRNA:   3'- gCGCGUCGGCGC-AGCCGcuacaggcu -5'
24166 3' -60.7 NC_005263.2 + 44805 0.68 0.33202
Target:  5'- cCGCGCGGCCGCGcccaggcaagaaaaCGGCGGacUgCGAg -3'
miRNA:   3'- -GCGCGUCGGCGCa-------------GCCGCUacAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 28976 0.68 0.335934
Target:  5'- aCGCGCAagcGCCcggcgauGCGcUCGGCGcgG-CCGAc -3'
miRNA:   3'- -GCGCGU---CGG-------CGC-AGCCGCuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 24815 0.67 0.343862
Target:  5'- gCGCGUauucggccuauacGGCCgGCGgcaaCGGCGGUG-CCGGu -3'
miRNA:   3'- -GCGCG-------------UCGG-CGCa---GCCGCUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 40522 0.67 0.352737
Target:  5'- gCGCGUGGcCCGCaUUacaagGGCGAUGUgCGAg -3'
miRNA:   3'- -GCGCGUC-GGCGcAG-----CCGCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 27526 0.67 0.352737
Target:  5'- uCGCGguGCC-CGUCGGCacgG-CCGGc -3'
miRNA:   3'- -GCGCguCGGcGCAGCCGcuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 9208 0.67 0.352737
Target:  5'- aCGgGCGGCgCuCGUaCGGCGcgcgguacGUGUCCGAc -3'
miRNA:   3'- -GCgCGUCG-GcGCA-GCCGC--------UACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 32744 0.67 0.352737
Target:  5'- aCGCGCuGCCGCuugcgCGGCGcaAUGcgaCCGAc -3'
miRNA:   3'- -GCGCGuCGGCGca---GCCGC--UACa--GGCU- -5'
24166 3' -60.7 NC_005263.2 + 18610 0.67 0.360945
Target:  5'- aCGcCGCAGCgGCGUucgCGGCaGGUGgcaacCCGGg -3'
miRNA:   3'- -GC-GCGUCGgCGCA---GCCG-CUACa----GGCU- -5'
24166 3' -60.7 NC_005263.2 + 9526 0.67 0.360945
Target:  5'- uCGUGCGGCCGUGcgCGGCagcGaCCGAc -3'
miRNA:   3'- -GCGCGUCGGCGCa-GCCGcuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 21916 0.67 0.360945
Target:  5'- uCGCGCGGCCGCcgcgCGGCcgcaGAccGUCCu- -3'
miRNA:   3'- -GCGCGUCGGCGca--GCCG----CUa-CAGGcu -5'
24166 3' -60.7 NC_005263.2 + 12179 0.67 0.369285
Target:  5'- -uCGCGGCCGUGUCG-CGAUGaagCgGAu -3'
miRNA:   3'- gcGCGUCGGCGCAGCcGCUACa--GgCU- -5'
24166 3' -60.7 NC_005263.2 + 14014 0.67 0.369285
Target:  5'- aCGCGCgaGGCgcaGCGaCGGCGAcgGUUCGGc -3'
miRNA:   3'- -GCGCG--UCGg--CGCaGCCGCUa-CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 14072 0.67 0.377756
Target:  5'- aGCGC-GCCGCGcCGGCccAUGUCgGc -3'
miRNA:   3'- gCGCGuCGGCGCaGCCGc-UACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 44669 0.67 0.377756
Target:  5'- uCGCGCGcGCCGaagaaGUCGGCGGccaUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCg----CAGCCGCUac-AGGcu -5'
24166 3' -60.7 NC_005263.2 + 33160 0.67 0.377756
Target:  5'- aGCGCGGCgccuugcauCGCGaCGGgGAUGU-CGAg -3'
miRNA:   3'- gCGCGUCG---------GCGCaGCCgCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 34569 0.67 0.385491
Target:  5'- gGCGCAGCCacggucaGCGUCGcuugauuacucGCGGacgUGUCgGAg -3'
miRNA:   3'- gCGCGUCGG-------CGCAGC-----------CGCU---ACAGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.