miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 27378 0.68 0.313703
Target:  5'- gGCGCGGCgGCGgcCGGCGcgcUGaCCGGc -3'
miRNA:   3'- gCGCGUCGgCGCa-GCCGCu--ACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 27526 0.67 0.352737
Target:  5'- uCGCGguGCC-CGUCGGCacgG-CCGGc -3'
miRNA:   3'- -GCGCguCGGcGCAGCCGcuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 28077 0.71 0.185439
Target:  5'- aCGCGCGGCacgaucccgUGUGUUGGCGcgG-CCGAu -3'
miRNA:   3'- -GCGCGUCG---------GCGCAGCCGCuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 28933 0.71 0.189832
Target:  5'- aCGCGCggccacgAGCCGCGcCGGCGGaugcacgGUCaCGAc -3'
miRNA:   3'- -GCGCG-------UCGGCGCaGCCGCUa------CAG-GCU- -5'
24166 3' -60.7 NC_005263.2 + 28976 0.68 0.335934
Target:  5'- aCGCGCAagcGCCcggcgauGCGcUCGGCGcgG-CCGAc -3'
miRNA:   3'- -GCGCGU---CGG-------CGC-AGCCGCuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 29048 0.74 0.127877
Target:  5'- gCGCGCAgGCCGCG-CGGCGc-GUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCGCaGCCGCuaCAGGcu -5'
24166 3' -60.7 NC_005263.2 + 30355 0.71 0.216485
Target:  5'- aGCGCGGCCGCGcugccgcCGGCGccgaGUgCGAg -3'
miRNA:   3'- gCGCGUCGGCGCa------GCCGCua--CAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 30370 0.66 0.431246
Target:  5'- uCGUGCAG-CGCuUCGGgGAUGUgCGc -3'
miRNA:   3'- -GCGCGUCgGCGcAGCCgCUACAgGCu -5'
24166 3' -60.7 NC_005263.2 + 30720 0.76 0.094752
Target:  5'- gCGCGCGGCCGCGcCGGCagacagcuucacGcgGUUCGGa -3'
miRNA:   3'- -GCGCGUCGGCGCaGCCG------------CuaCAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 30935 0.69 0.26469
Target:  5'- aCGCGCgAGCUGCGcauucggcuucUCGGCcGUG-CCGAc -3'
miRNA:   3'- -GCGCG-UCGGCGC-----------AGCCGcUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 31618 0.72 0.180192
Target:  5'- uCGCGaCGGCCGCG-CGGCGcagcgccgucucgGUGUUCGu -3'
miRNA:   3'- -GCGC-GUCGGCGCaGCCGC-------------UACAGGCu -5'
24166 3' -60.7 NC_005263.2 + 32094 0.7 0.239577
Target:  5'- aCGUGCGGCgGCGUCGGUGcga-UCGAg -3'
miRNA:   3'- -GCGCGUCGgCGCAGCCGCuacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 32744 0.67 0.352737
Target:  5'- aCGCGCuGCCGCuugcgCGGCGcaAUGcgaCCGAc -3'
miRNA:   3'- -GCGCGuCGGCGca---GCCGC--UACa--GGCU- -5'
24166 3' -60.7 NC_005263.2 + 32752 0.7 0.237776
Target:  5'- uGCGCAguacgacguucagcGCCGCGUCGGgguucuCGGUGUCgGc -3'
miRNA:   3'- gCGCGU--------------CGGCGCAGCC------GCUACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 33160 0.67 0.377756
Target:  5'- aGCGCGGCgccuugcauCGCGaCGGgGAUGU-CGAg -3'
miRNA:   3'- gCGCGUCG---------GCGCaGCCgCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 34569 0.67 0.385491
Target:  5'- gGCGCAGCCacggucaGCGUCGcuugauuacucGCGGacgUGUCgGAg -3'
miRNA:   3'- gCGCGUCGG-------CGCAGC-----------CGCU---ACAGgCU- -5'
24166 3' -60.7 NC_005263.2 + 36215 0.69 0.291896
Target:  5'- gCGCGCAggcgcccggcGCCGCGUCGucaGAuaUGUUCGAc -3'
miRNA:   3'- -GCGCGU----------CGGCGCAGCcg-CU--ACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 37419 0.72 0.179252
Target:  5'- uCGCGCGGCCGUccucgucgucauacGUCGGCGcgcgcgGUCUGc -3'
miRNA:   3'- -GCGCGUCGGCG--------------CAGCCGCua----CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 37608 0.69 0.278028
Target:  5'- aCGCGCugguuuaucAGCCGuCG-CGGuUGAUGUUCGAa -3'
miRNA:   3'- -GCGCG---------UCGGC-GCaGCC-GCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 38564 0.68 0.321241
Target:  5'- cCGCGagcGCCGCGUCGGuCGcUG-CCGc -3'
miRNA:   3'- -GCGCgu-CGGCGCAGCC-GCuACaGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.