miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 39144 0.66 0.412922
Target:  5'- gGCgGCA-CCGUGUCGGCGAcGUugcUCGAc -3'
miRNA:   3'- gCG-CGUcGGCGCAGCCGCUaCA---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 39724 0.68 0.299031
Target:  5'- gGCGCgGGCCGCGUCgaccuGGCGAgcgaaCUGAa -3'
miRNA:   3'- gCGCG-UCGGCGCAG-----CCGCUaca--GGCU- -5'
24166 3' -60.7 NC_005263.2 + 39994 0.76 0.084855
Target:  5'- uGgGCcuGCCGcCGaCGGCGAUGUCCGAu -3'
miRNA:   3'- gCgCGu-CGGC-GCaGCCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 40522 0.67 0.352737
Target:  5'- gCGCGUGGcCCGCaUUacaagGGCGAUGUgCGAg -3'
miRNA:   3'- -GCGCGUC-GGCGcAG-----CCGCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 40918 0.72 0.173249
Target:  5'- gGCGCAGCCGCacauacccggguaucGcagCGGCGAUGgCCGc -3'
miRNA:   3'- gCGCGUCGGCG---------------Ca--GCCGCUACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 41549 0.69 0.258218
Target:  5'- aCGCGCGgcgcGCCGUGgCGGCGAUG--CGAg -3'
miRNA:   3'- -GCGCGU----CGGCGCaGCCGCUACagGCU- -5'
24166 3' -60.7 NC_005263.2 + 43052 0.69 0.271293
Target:  5'- gGCGCgacaauGGcCCGCGUUGGCGG-GUuuGAu -3'
miRNA:   3'- gCGCG------UC-GGCGCAGCCGCUaCAggCU- -5'
24166 3' -60.7 NC_005263.2 + 44669 0.67 0.377756
Target:  5'- uCGCGCGcGCCGaagaaGUCGGCGGccaUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCg----CAGCCGCUac-AGGcu -5'
24166 3' -60.7 NC_005263.2 + 44805 0.68 0.33202
Target:  5'- cCGCGCGGCCGCGcccaggcaagaaaaCGGCGGacUgCGAg -3'
miRNA:   3'- -GCGCGUCGGCGCa-------------GCCGCUacAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 46684 0.69 0.291896
Target:  5'- gCGCGCAGCCaaGgCGGCGcgcgCCGAc -3'
miRNA:   3'- -GCGCGUCGGcgCaGCCGCuacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 47298 0.66 0.395086
Target:  5'- aGCGCAGuCCGCuGUCGaCGGacUGggugCCGAc -3'
miRNA:   3'- gCGCGUC-GGCG-CAGCcGCU--ACa---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.