miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 20286 0.66 0.394208
Target:  5'- aCGCGUGccgcgaaggugacGCCGCGaucacgaCGGCGAUGUaCCGc -3'
miRNA:   3'- -GCGCGU-------------CGGCGCa------GCCGCUACA-GGCu -5'
24166 3' -60.7 NC_005263.2 + 18932 0.66 0.431246
Target:  5'- nGCGCGGCacgaGCGcUCGaGCGcgccgGUUCGAg -3'
miRNA:   3'- gCGCGUCGg---CGC-AGC-CGCua---CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 18906 0.68 0.321241
Target:  5'- aCGCGcCGGCCuGCGUCGaGCG-UGaCCGc -3'
miRNA:   3'- -GCGC-GUCGG-CGCAGC-CGCuACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 18610 0.67 0.360945
Target:  5'- aCGcCGCAGCgGCGUucgCGGCaGGUGgcaacCCGGg -3'
miRNA:   3'- -GC-GCGUCGgCGCA---GCCG-CUACa----GGCU- -5'
24166 3' -60.7 NC_005263.2 + 18559 0.69 0.26469
Target:  5'- uCGCGCAGCC-CGgcacCGGUGgcGUCCc- -3'
miRNA:   3'- -GCGCGUCGGcGCa---GCCGCuaCAGGcu -5'
24166 3' -60.7 NC_005263.2 + 17808 0.72 0.180663
Target:  5'- aCGC-CGGCCGCGccCGGCGcUGUCgCGGa -3'
miRNA:   3'- -GCGcGUCGGCGCa-GCCGCuACAG-GCU- -5'
24166 3' -60.7 NC_005263.2 + 17763 0.68 0.328913
Target:  5'- aGCGCGGCCGCGcUCGGCa-------- -3'
miRNA:   3'- gCGCGUCGGCGC-AGCCGcuacaggcu -5'
24166 3' -60.7 NC_005263.2 + 17397 0.74 0.121146
Target:  5'- gGCGCGGCCGCGcgccuggCgGGCGGUGUCg-- -3'
miRNA:   3'- gCGCGUCGGCGCa------G-CCGCUACAGgcu -5'
24166 3' -60.7 NC_005263.2 + 17150 0.66 0.395086
Target:  5'- --aGCGGUCGaCGUC-GCGGUGUUCGGc -3'
miRNA:   3'- gcgCGUCGGC-GCAGcCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 16362 0.78 0.066071
Target:  5'- gCGCGCGGCCGCGucgcUCGGCGGcgGcCUGAu -3'
miRNA:   3'- -GCGCGUCGGCGC----AGCCGCUa-CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 15592 0.66 0.437771
Target:  5'- aGCGCGGCCGgugcacgagcgauaCGaacgCGGCGAaGUUCGu -3'
miRNA:   3'- gCGCGUCGGC--------------GCa---GCCGCUaCAGGCu -5'
24166 3' -60.7 NC_005263.2 + 14147 0.73 0.142387
Target:  5'- aGCGCGGCCGCcUUGGCGAcuucgGgCCGGc -3'
miRNA:   3'- gCGCGUCGGCGcAGCCGCUa----CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 14072 0.67 0.377756
Target:  5'- aGCGC-GCCGCGcCGGCccAUGUCgGc -3'
miRNA:   3'- gCGCGuCGGCGCaGCCGc-UACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 14014 0.67 0.369285
Target:  5'- aCGCGCgaGGCgcaGCGaCGGCGAcgGUUCGGc -3'
miRNA:   3'- -GCGCG--UCGg--CGCaGCCGCUa-CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 13567 0.68 0.306299
Target:  5'- gGCGCGGCaCGag-CGGCG-UGUCCa- -3'
miRNA:   3'- gCGCGUCG-GCgcaGCCGCuACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 12998 0.7 0.251876
Target:  5'- uGCGUuuaGGCCG-GUCGGCguGAUG-CCGAg -3'
miRNA:   3'- gCGCG---UCGGCgCAGCCG--CUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 12579 0.66 0.431246
Target:  5'- cCGCGC-GCCGCcgggcgcaGUCGGCGcgccaGUGUCa-- -3'
miRNA:   3'- -GCGCGuCGGCG--------CAGCCGC-----UACAGgcu -5'
24166 3' -60.7 NC_005263.2 + 12179 0.67 0.369285
Target:  5'- -uCGCGGCCGUGUCG-CGAUGaagCgGAu -3'
miRNA:   3'- gcGCGUCGGCGCAGCcGCUACa--GgCU- -5'
24166 3' -60.7 NC_005263.2 + 10498 0.69 0.26469
Target:  5'- cCGCGaCGGCugauaaaccagCGCGUCGGCGAg--CUGAc -3'
miRNA:   3'- -GCGC-GUCG-----------GCGCAGCCGCUacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 10389 0.74 0.117905
Target:  5'- aCGCGCcgGGCCG-GcCGGCGAgcggGUCCGGc -3'
miRNA:   3'- -GCGCG--UCGGCgCaGCCGCUa---CAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.