miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 40522 0.67 0.352737
Target:  5'- gCGCGUGGcCCGCaUUacaagGGCGAUGUgCGAg -3'
miRNA:   3'- -GCGCGUC-GGCGcAG-----CCGCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 20286 0.66 0.394208
Target:  5'- aCGCGUGccgcgaaggugacGCCGCGaucacgaCGGCGAUGUaCCGc -3'
miRNA:   3'- -GCGCGU-------------CGGCGCa------GCCGCUACA-GGCu -5'
24166 3' -60.7 NC_005263.2 + 17150 0.66 0.395086
Target:  5'- --aGCGGUCGaCGUC-GCGGUGUUCGGc -3'
miRNA:   3'- gcgCGUCGGC-GCAGcCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 40918 0.72 0.173249
Target:  5'- gGCGCAGCCGCacauacccggguaucGcagCGGCGAUGgCCGc -3'
miRNA:   3'- gCGCGUCGGCG---------------Ca--GCCGCUACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 39144 0.66 0.412922
Target:  5'- gGCgGCA-CCGUGUCGGCGAcGUugcUCGAc -3'
miRNA:   3'- gCG-CGUcGGCGCAGCCGCUaCA---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 28077 0.71 0.185439
Target:  5'- aCGCGCGGCacgaucccgUGUGUUGGCGcgG-CCGAu -3'
miRNA:   3'- -GCGCGUCG---------GCGCAGCCGCuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 28976 0.68 0.335934
Target:  5'- aCGCGCAagcGCCcggcgauGCGcUCGGCGcgG-CCGAc -3'
miRNA:   3'- -GCGCGU---CGG-------CGC-AGCCGCuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 17763 0.68 0.328913
Target:  5'- aGCGCGGCCGCGcUCGGCa-------- -3'
miRNA:   3'- gCGCGUCGGCGC-AGCCGcuacaggcu -5'
24166 3' -60.7 NC_005263.2 + 38564 0.68 0.321241
Target:  5'- cCGCGagcGCCGCGUCGGuCGcUG-CCGc -3'
miRNA:   3'- -GCGCgu-CGGCGCAGCC-GCuACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 16362 0.78 0.066071
Target:  5'- gCGCGCGGCCGCGucgcUCGGCGGcgGcCUGAu -3'
miRNA:   3'- -GCGCGUCGGCGC----AGCCGCUa-CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 27136 1.08 0.000344
Target:  5'- gCGCGCAGCCGCGUCGGCGAUGUCCGAc -3'
miRNA:   3'- -GCGCGUCGGCGCAGCCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 22216 0.7 0.239577
Target:  5'- aCGuCGCGGCCGuCGcCGGCGucgGcCCGGu -3'
miRNA:   3'- -GC-GCGUCGGC-GCaGCCGCua-CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 2695 0.69 0.258218
Target:  5'- uCGCGCGGCCGC-UCGGCaGGUG-Ca-- -3'
miRNA:   3'- -GCGCGUCGGCGcAGCCG-CUACaGgcu -5'
24166 3' -60.7 NC_005263.2 + 41549 0.69 0.258218
Target:  5'- aCGCGCGgcgcGCCGUGgCGGCGAUG--CGAg -3'
miRNA:   3'- -GCGCGU----CGGCGCaGCCGCUACagGCU- -5'
24166 3' -60.7 NC_005263.2 + 10498 0.69 0.26469
Target:  5'- cCGCGaCGGCugauaaaccagCGCGUCGGCGAg--CUGAc -3'
miRNA:   3'- -GCGC-GUCG-----------GCGCAGCCGCUacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 30935 0.69 0.26469
Target:  5'- aCGCGCgAGCUGCGcauucggcuucUCGGCcGUG-CCGAc -3'
miRNA:   3'- -GCGCG-UCGGCGC-----------AGCCGcUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 36215 0.69 0.291896
Target:  5'- gCGCGCAggcgcccggcGCCGCGUCGucaGAuaUGUUCGAc -3'
miRNA:   3'- -GCGCGU----------CGGCGCAGCcg-CU--ACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 26199 0.7 0.239577
Target:  5'- gCGCgGCGGCCGCGcgaugCGGCGGccGUUCGc -3'
miRNA:   3'- -GCG-CGUCGGCGCa----GCCGCUa-CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 22412 0.7 0.233617
Target:  5'- aCGCGCcGCCGUGcUCGcCG-UGUCCGGg -3'
miRNA:   3'- -GCGCGuCGGCGC-AGCcGCuACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 18906 0.68 0.321241
Target:  5'- aCGCGcCGGCCuGCGUCGaGCG-UGaCCGc -3'
miRNA:   3'- -GCGC-GUCGG-CGCAGC-CGCuACaGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.