miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24167 5' -59.3 NC_005263.2 + 527 0.66 0.469473
Target:  5'- aGCuuGACGUUCGACUCGAcguaGCCUUGc-- -3'
miRNA:   3'- gCG--CUGCGAGCUGGGCU----CGGAACcua -5'
24167 5' -59.3 NC_005263.2 + 34017 0.66 0.459621
Target:  5'- uCGCGGCGCgCGAUCCaGAGCUgcUGcGGUg -3'
miRNA:   3'- -GCGCUGCGaGCUGGG-CUCGGa-AC-CUA- -5'
24167 5' -59.3 NC_005263.2 + 23608 0.66 0.449879
Target:  5'- uCGUGACGUUCGGCggcaccguggUCGAGCC--GGAg -3'
miRNA:   3'- -GCGCUGCGAGCUG----------GGCUCGGaaCCUa -5'
24167 5' -59.3 NC_005263.2 + 27465 0.66 0.449879
Target:  5'- aGCGGCGCggccacugCGGCCaCG-GCCUUGa-- -3'
miRNA:   3'- gCGCUGCGa-------GCUGG-GCuCGGAACcua -5'
24167 5' -59.3 NC_005263.2 + 30485 0.66 0.440252
Target:  5'- aCGCaucGAUGCgCGACCCGcGCCacUGGAa -3'
miRNA:   3'- -GCG---CUGCGaGCUGGGCuCGGa-ACCUa -5'
24167 5' -59.3 NC_005263.2 + 21188 0.66 0.430744
Target:  5'- aCGCgGACGCgcgCGGCgCGGGCgagUGGGUg -3'
miRNA:   3'- -GCG-CUGCGa--GCUGgGCUCGga-ACCUA- -5'
24167 5' -59.3 NC_005263.2 + 19685 0.67 0.402959
Target:  5'- cCGCGACGUucacgcgCGugCCGGcGCCUccggGGGUa -3'
miRNA:   3'- -GCGCUGCGa------GCugGGCU-CGGAa---CCUA- -5'
24167 5' -59.3 NC_005263.2 + 7977 0.68 0.361787
Target:  5'- aCGCGGCGCcagagcugcacgagUCGGCCCGAuGCCgugucguacuccGGAa -3'
miRNA:   3'- -GCGCUGCG--------------AGCUGGGCU-CGGaa----------CCUa -5'
24167 5' -59.3 NC_005263.2 + 27025 0.69 0.282192
Target:  5'- uGCGGCGUgcCGACCUGGccGCCUugUGGAUc -3'
miRNA:   3'- gCGCUGCGa-GCUGGGCU--CGGA--ACCUA- -5'
24167 5' -59.3 NC_005263.2 + 29031 0.74 0.150831
Target:  5'- cCGCGACGCcguacUGACgCGcGGCCUUGGAUa -3'
miRNA:   3'- -GCGCUGCGa----GCUGgGC-UCGGAACCUA- -5'
24167 5' -59.3 NC_005263.2 + 20558 0.76 0.10549
Target:  5'- cCGCGACGCUCGugCCcGGCCUgccGGc- -3'
miRNA:   3'- -GCGCUGCGAGCugGGcUCGGAa--CCua -5'
24167 5' -59.3 NC_005263.2 + 26376 1.05 0.000702
Target:  5'- uCGCGACGCUCGACCCGAGCCUUGGAUu -3'
miRNA:   3'- -GCGCUGCGAGCUGGGCUCGGAACCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.