miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 12545 0.69 0.357821
Target:  5'- cGUUC-GCg---GCGGCCGGCGGCGc- -3'
miRNA:   3'- -UAAGcCGgauaUGCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 17742 0.69 0.357821
Target:  5'- -cUC-GCaCUcgGC-GCCGGCGGCAGCg -3'
miRNA:   3'- uaAGcCG-GAuaUGcCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 45413 0.69 0.357821
Target:  5'- -cUCGGUCUGUcggccGCcGCCGGC-GCGACa -3'
miRNA:   3'- uaAGCCGGAUA-----UGcCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 24991 0.69 0.357821
Target:  5'- --cCGGCCUggccgcaaccggGUAUGGCUgcgguGGCGGUGGCu -3'
miRNA:   3'- uaaGCCGGA------------UAUGCCGG-----CCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 5847 0.68 0.363854
Target:  5'- -gUCGGCCgucGUGCGGUCgaagucgagccgcaGGCGGUAc- -3'
miRNA:   3'- uaAGCCGGa--UAUGCCGG--------------CCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 27537 0.68 0.366461
Target:  5'- -gUCGGC----ACGGCCGGCaGGCcgGGCa -3'
miRNA:   3'- uaAGCCGgauaUGCCGGCCG-CCG--UUG- -5'
24169 3' -57.8 NC_005263.2 + 2645 0.68 0.366461
Target:  5'- -aUCGcGCUUGc-CGGCguauCGGCGGCGACa -3'
miRNA:   3'- uaAGC-CGGAUauGCCG----GCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 23553 0.68 0.375244
Target:  5'- -gUCgGGCCUGUucccGCaGCCGGCaGGCAc- -3'
miRNA:   3'- uaAG-CCGGAUA----UGcCGGCCG-CCGUug -5'
24169 3' -57.8 NC_005263.2 + 32677 0.68 0.375244
Target:  5'- -cUCGcGCCguaccUGUACGGCCGGCucaccGGCuuGCu -3'
miRNA:   3'- uaAGC-CGG-----AUAUGCCGGCCG-----CCGu-UG- -5'
24169 3' -57.8 NC_005263.2 + 13153 0.68 0.375244
Target:  5'- -aUC-GCCUAUAUGGCUGcCGGCAcgGCa -3'
miRNA:   3'- uaAGcCGGAUAUGCCGGCcGCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 26310 0.68 0.375244
Target:  5'- --cCGGCCagcUGCaGGCCGGuCGGCGu- -3'
miRNA:   3'- uaaGCCGGau-AUG-CCGGCC-GCCGUug -5'
24169 3' -57.8 NC_005263.2 + 47189 0.68 0.384168
Target:  5'- cGUUCGauGCgUcgACGaguaacccGCCGGCGGCGACc -3'
miRNA:   3'- -UAAGC--CGgAuaUGC--------CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 15431 0.68 0.393232
Target:  5'- --cCGGCCguacagGUACGGCgCGa-GGCAGCg -3'
miRNA:   3'- uaaGCCGGa-----UAUGCCG-GCcgCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 28949 0.68 0.402434
Target:  5'- --aCGGCCcAUGCGGUCGGauCGGUGucGCg -3'
miRNA:   3'- uaaGCCGGaUAUGCCGGCC--GCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 39286 0.68 0.402434
Target:  5'- -aUCGcacGCCga-GCGGCCGGCaGGCGcauGCg -3'
miRNA:   3'- uaAGC---CGGauaUGCCGGCCG-CCGU---UG- -5'
24169 3' -57.8 NC_005263.2 + 20854 0.68 0.402434
Target:  5'- --cCGGagaCCUAacgcuauCGGCCGGCGGCGc- -3'
miRNA:   3'- uaaGCC---GGAUau-----GCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 16366 0.68 0.402434
Target:  5'- --gCGGCCgcguCGcUCGGCGGCGGCc -3'
miRNA:   3'- uaaGCCGGauauGCcGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 44111 0.67 0.411771
Target:  5'- -aUCGGUCagGUGCGcuGCuCGGCGGCGcGCg -3'
miRNA:   3'- uaAGCCGGa-UAUGC--CG-GCCGCCGU-UG- -5'
24169 3' -57.8 NC_005263.2 + 37960 0.67 0.411771
Target:  5'- --cCGGCCgAUGCcgcgccGGCUggcgcugaagguGGCGGCAACg -3'
miRNA:   3'- uaaGCCGGaUAUG------CCGG------------CCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 18163 0.67 0.42124
Target:  5'- -aUCGGCg---GCGGCguUGGCGGCAu- -3'
miRNA:   3'- uaAGCCGgauaUGCCG--GCCGCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.