miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 4581 0.67 0.444493
Target:  5'- -gUCGGCaaucgucuuuuccaUGaACGGCCGcGCcGGCAGCu -3'
miRNA:   3'- uaAGCCGg-------------AUaUGCCGGC-CG-CCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 19387 0.67 0.440567
Target:  5'- -gUCaGCCUcgGCGGCgCGcaguaCGGCAACg -3'
miRNA:   3'- uaAGcCGGAuaUGCCG-GCc----GCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 35517 0.67 0.439589
Target:  5'- --gUGGCCccguaagUGUGCcGCCGGCgaucGGCAGCa -3'
miRNA:   3'- uaaGCCGG-------AUAUGcCGGCCG----CCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 32647 0.67 0.434716
Target:  5'- --gCGGCCgaaaGCcuuccggauggcgcgGGUCGGCGGCGAUg -3'
miRNA:   3'- uaaGCCGGaua-UG---------------CCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 33447 0.67 0.43084
Target:  5'- -gUCGGCgUGUGgGGCaagaCGGCGGaCGAg -3'
miRNA:   3'- uaAGCCGgAUAUgCCG----GCCGCC-GUUg -5'
24169 3' -57.8 NC_005263.2 + 9356 0.67 0.42124
Target:  5'- -aUCGGUgaAgGCGagcGCCGGCGGCuGCg -3'
miRNA:   3'- uaAGCCGgaUaUGC---CGGCCGCCGuUG- -5'
24169 3' -57.8 NC_005263.2 + 18163 0.67 0.42124
Target:  5'- -aUCGGCg---GCGGCguUGGCGGCAu- -3'
miRNA:   3'- uaAGCCGgauaUGCCG--GCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 37767 0.67 0.42124
Target:  5'- --aCGGCCggaugACGGCUauccGUGGCAACc -3'
miRNA:   3'- uaaGCCGGaua--UGCCGGc---CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 47402 0.67 0.42124
Target:  5'- --aCGGCgCUc-GCGGgCGGCGGCAc- -3'
miRNA:   3'- uaaGCCG-GAuaUGCCgGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 17024 0.67 0.42124
Target:  5'- cUUCGagaacgauGUCgcaGCGGCUGGUGGCGGCg -3'
miRNA:   3'- uAAGC--------CGGauaUGCCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 44111 0.67 0.411771
Target:  5'- -aUCGGUCagGUGCGcuGCuCGGCGGCGcGCg -3'
miRNA:   3'- uaAGCCGGa-UAUGC--CG-GCCGCCGU-UG- -5'
24169 3' -57.8 NC_005263.2 + 37960 0.67 0.411771
Target:  5'- --cCGGCCgAUGCcgcgccGGCUggcgcugaagguGGCGGCAACg -3'
miRNA:   3'- uaaGCCGGaUAUG------CCGG------------CCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 39286 0.68 0.402434
Target:  5'- -aUCGcacGCCga-GCGGCCGGCaGGCGcauGCg -3'
miRNA:   3'- uaAGC---CGGauaUGCCGGCCG-CCGU---UG- -5'
24169 3' -57.8 NC_005263.2 + 16366 0.68 0.402434
Target:  5'- --gCGGCCgcguCGcUCGGCGGCGGCc -3'
miRNA:   3'- uaaGCCGGauauGCcGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 20854 0.68 0.402434
Target:  5'- --cCGGagaCCUAacgcuauCGGCCGGCGGCGc- -3'
miRNA:   3'- uaaGCC---GGAUau-----GCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 28949 0.68 0.402434
Target:  5'- --aCGGCCcAUGCGGUCGGauCGGUGucGCg -3'
miRNA:   3'- uaaGCCGGaUAUGCCGGCC--GCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 15431 0.68 0.393232
Target:  5'- --cCGGCCguacagGUACGGCgCGa-GGCAGCg -3'
miRNA:   3'- uaaGCCGGa-----UAUGCCG-GCcgCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 47189 0.68 0.384168
Target:  5'- cGUUCGauGCgUcgACGaguaacccGCCGGCGGCGACc -3'
miRNA:   3'- -UAAGC--CGgAuaUGC--------CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 32677 0.68 0.375244
Target:  5'- -cUCGcGCCguaccUGUACGGCCGGCucaccGGCuuGCu -3'
miRNA:   3'- uaAGC-CGG-----AUAUGCCGGCCG-----CCGu-UG- -5'
24169 3' -57.8 NC_005263.2 + 13153 0.68 0.375244
Target:  5'- -aUC-GCCUAUAUGGCUGcCGGCAcgGCa -3'
miRNA:   3'- uaAGcCGGAUAUGCCGGCcGCCGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.