miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 29755 0.66 0.272739
Target:  5'- aGGUGCGCCGGguUCuGCGGgUucagcaGCGuGCCg -3'
miRNA:   3'- gCCACGCGGUC--GGcCGCCgA------UGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 15245 0.66 0.272739
Target:  5'- uGGUGCuGuCCGGCUacaugcuGCGGCUugucGCGGCg -3'
miRNA:   3'- gCCACG-C-GGUCGGc------CGCCGA----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 11142 0.66 0.272081
Target:  5'- uGGUaacaaccGCGCCcgcagccuAGCUGGcCGGCUGCGacacgcgguuaaGCCg -3'
miRNA:   3'- gCCA-------CGCGG--------UCGGCC-GCCGAUGC------------CGG- -5'
24169 5' -64.2 NC_005263.2 + 30631 0.66 0.266221
Target:  5'- aGGaugcUGCGCCGGCCGGCGuugACG-UCg -3'
miRNA:   3'- gCC----ACGCGGUCGGCCGCcgaUGCcGG- -5'
24169 5' -64.2 NC_005263.2 + 2264 0.66 0.266221
Target:  5'- ---cGCGCCGcgcGCuCGGCcaaGGUUGCGGUCa -3'
miRNA:   3'- gccaCGCGGU---CG-GCCG---CCGAUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 30928 0.66 0.266221
Target:  5'- aCGGcguacGCGCgAGCUGcGCauucGGCUucuCGGCCg -3'
miRNA:   3'- -GCCa----CGCGgUCGGC-CG----CCGAu--GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 37894 0.66 0.262372
Target:  5'- ---cGCGUCuggacucgagcccgaGGCCGGCgaGGCUuCGGCCu -3'
miRNA:   3'- gccaCGCGG---------------UCGGCCG--CCGAuGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 46083 0.66 0.259831
Target:  5'- gCGG-GCGCCGuuaugcGCCGcuGCGGauuuggcGCGGCCu -3'
miRNA:   3'- -GCCaCGCGGU------CGGC--CGCCga-----UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 2687 0.66 0.259831
Target:  5'- ---aGUGUCGcGCCGGCGGC---GGCCg -3'
miRNA:   3'- gccaCGCGGU-CGGCCGCCGaugCCGG- -5'
24169 5' -64.2 NC_005263.2 + 42019 0.66 0.259831
Target:  5'- -aGUGCgGCCGGCCGcGCcaaGGCUuccuguCGGCg -3'
miRNA:   3'- gcCACG-CGGUCGGC-CG---CCGAu-----GCCGg -5'
24169 5' -64.2 NC_005263.2 + 24938 0.66 0.259831
Target:  5'- uCGGUgGCGgCGGaCGGCGGUgcGCGGUUc -3'
miRNA:   3'- -GCCA-CGCgGUCgGCCGCCGa-UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 27380 0.66 0.259831
Target:  5'- aGGcGCGCUucguuGCCGaCGGCc-CGGCCu -3'
miRNA:   3'- gCCaCGCGGu----CGGCcGCCGauGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 34024 0.66 0.259199
Target:  5'- cCGGUaccagccgacauGgGCCGGCgCGGCGcGCUcaaugcgcucgacGCGGCg -3'
miRNA:   3'- -GCCA------------CgCGGUCG-GCCGC-CGA-------------UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 45721 0.66 0.257938
Target:  5'- uGGUGCcCCGGCCuGCcgcucggugcugagGGUUggcACGGCCu -3'
miRNA:   3'- gCCACGcGGUCGGcCG--------------CCGA---UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 35758 0.66 0.253566
Target:  5'- gCGG-GCGCgguuacugCGGCUGGCGGCgu--GCCa -3'
miRNA:   3'- -GCCaCGCG--------GUCGGCCGCCGaugcCGG- -5'
24169 5' -64.2 NC_005263.2 + 9508 0.66 0.253566
Target:  5'- uCGcGUGCGCgGGCUGaaucguGCGGCcgugcGCGGCa -3'
miRNA:   3'- -GC-CACGCGgUCGGC------CGCCGa----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 19773 0.66 0.253566
Target:  5'- -cGUGCGCCucacgGGCuCGGCGGCcgaccagauuCGcGCCg -3'
miRNA:   3'- gcCACGCGG-----UCG-GCCGCCGau--------GC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 28937 0.66 0.253566
Target:  5'- gCGGccacgaGCCGcGCCGGCGGaugcACGGUCa -3'
miRNA:   3'- -GCCacg---CGGU-CGGCCGCCga--UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 21712 0.67 0.247426
Target:  5'- aGGUGCGUgCGGCUGGaauccaaGGCUcgGGUCg -3'
miRNA:   3'- gCCACGCG-GUCGGCCg------CCGAugCCGG- -5'
24169 5' -64.2 NC_005263.2 + 23294 0.67 0.247426
Target:  5'- gGGgacagGCGCCGuuuuaCGGCGGCcagGCGGgCg -3'
miRNA:   3'- gCCa----CGCGGUcg---GCCGCCGa--UGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.