miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 3' -55.7 NC_005263.2 + 32087 0.66 0.66463
Target:  5'- -gUGCGUcaCGuGCGGCGGCGuCGGUg -3'
miRNA:   3'- aaAUGCAuaGCcCGUUGCCGCcGCCG- -5'
24170 3' -55.7 NC_005263.2 + 44770 0.66 0.66463
Target:  5'- --cGCG---CGcGGCGcCGGCGGCGcGCa -3'
miRNA:   3'- aaaUGCauaGC-CCGUuGCCGCCGC-CG- -5'
24170 3' -55.7 NC_005263.2 + 22374 0.66 0.653531
Target:  5'- --aGCGUGUCGauCGGCGGCaucgGGCaGGCc -3'
miRNA:   3'- aaaUGCAUAGCccGUUGCCG----CCG-CCG- -5'
24170 3' -55.7 NC_005263.2 + 22209 0.66 0.642411
Target:  5'- gUUACGUacGUCGcGGCcgucgcCGGCGuCGGCc -3'
miRNA:   3'- aAAUGCA--UAGC-CCGuu----GCCGCcGCCG- -5'
24170 3' -55.7 NC_005263.2 + 16556 0.66 0.642411
Target:  5'- --cGCGccgccUGGGCAGCgacgccaaGGcCGGCGGCg -3'
miRNA:   3'- aaaUGCaua--GCCCGUUG--------CC-GCCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 12091 0.66 0.631282
Target:  5'- cUUGuCGUcgCGGccuggcaugcGCAGCGGCGcGCGcGCc -3'
miRNA:   3'- aAAU-GCAuaGCC----------CGUUGCCGC-CGC-CG- -5'
24170 3' -55.7 NC_005263.2 + 39344 0.66 0.631282
Target:  5'- ---cCGgggCuGGCAGCcgauucgcucGGCGGCGGCg -3'
miRNA:   3'- aaauGCauaGcCCGUUG----------CCGCCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 1440 0.66 0.631282
Target:  5'- -cUGCGcg-CGaGGCuucGCGGCGcucGCGGCg -3'
miRNA:   3'- aaAUGCauaGC-CCGu--UGCCGC---CGCCG- -5'
24170 3' -55.7 NC_005263.2 + 5256 0.66 0.620153
Target:  5'- ---cCGUcaucagCGGGCGGugcCGGCaGCGGCa -3'
miRNA:   3'- aaauGCAua----GCCCGUU---GCCGcCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 32890 0.66 0.620153
Target:  5'- --gGCGaguuUCGuGGCGuCGGCgucGGCGGCc -3'
miRNA:   3'- aaaUGCau--AGC-CCGUuGCCG---CCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 41672 0.66 0.620153
Target:  5'- --gGCGgcagaucGUCGGGC-GCGGaCuGCGGCc -3'
miRNA:   3'- aaaUGCa------UAGCCCGuUGCC-GcCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 28798 0.66 0.616816
Target:  5'- cUUGCGcAUcCGGGCGcgucACGGUGaccgugacgcgcacGCGGCg -3'
miRNA:   3'- aAAUGCaUA-GCCCGU----UGCCGC--------------CGCCG- -5'
24170 3' -55.7 NC_005263.2 + 46282 0.66 0.609036
Target:  5'- cUUugGUAcUCGG---ACGGCGGCaGCa -3'
miRNA:   3'- aAAugCAU-AGCCcguUGCCGCCGcCG- -5'
24170 3' -55.7 NC_005263.2 + 25986 0.66 0.609036
Target:  5'- --gGCG-AUCGcgcuuGCAGCGuGcCGGCGGCa -3'
miRNA:   3'- aaaUGCaUAGCc----CGUUGC-C-GCCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 15378 0.66 0.609036
Target:  5'- --cACGcUGUCGGGUAGCGaccCGGCcGCc -3'
miRNA:   3'- aaaUGC-AUAGCCCGUUGCc--GCCGcCG- -5'
24170 3' -55.7 NC_005263.2 + 26191 0.67 0.597938
Target:  5'- -cUGCGgccgCGcGGCGGCcgcgcgauGCGGCGGCc -3'
miRNA:   3'- aaAUGCaua-GC-CCGUUGc-------CGCCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 24108 0.67 0.597938
Target:  5'- -cUACGUGcCGGGCuaucaguACGGCaccaCGGCa -3'
miRNA:   3'- aaAUGCAUaGCCCGu------UGCCGcc--GCCG- -5'
24170 3' -55.7 NC_005263.2 + 17477 0.67 0.593507
Target:  5'- -gUACGUcaugaacgcccugAUCGcGcGCGGCgcgucgaucgaucaGGCGGCGGCu -3'
miRNA:   3'- aaAUGCA-------------UAGC-C-CGUUG--------------CCGCCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 43272 0.67 0.587976
Target:  5'- --cGCGUA-CGGGCAACcGacuauccagauuccgGGCGGCg -3'
miRNA:   3'- aaaUGCAUaGCCCGUUGcCg--------------CCGCCG- -5'
24170 3' -55.7 NC_005263.2 + 25006 0.67 0.575842
Target:  5'- --------cCGGGUAuggcuGCGGUGGCGGUg -3'
miRNA:   3'- aaaugcauaGCCCGU-----UGCCGCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.