miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 28791 0.66 0.328095
Target:  5'- uGGUugccuugcgcauccgGGC-GCGUCACGGUgaccgugaCGcGCACGCg -3'
miRNA:   3'- gCCG---------------CCGaCGCGGUGCCA--------GC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 40286 0.66 0.325062
Target:  5'- -cGCGGUUGCGCagAUGcUCGGCguauaACGCg -3'
miRNA:   3'- gcCGCCGACGCGg-UGCcAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 31383 0.66 0.325062
Target:  5'- -uGCgGGCUGCuCgCGCGGUaGGUGCGCu -3'
miRNA:   3'- gcCG-CCGACGcG-GUGCCAgCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 45856 0.66 0.325062
Target:  5'- gCGcGCGGC-GCGCUACGGcaaguUCGaggauCACGCc -3'
miRNA:   3'- -GC-CGCCGaCGCGGUGCC-----AGCc----GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 22385 0.66 0.318316
Target:  5'- aCGGCGcGCaGCGCCAggaaagaggcgcccaGGUUGGCGacCGUc -3'
miRNA:   3'- -GCCGC-CGaCGCGGUg--------------CCAGCCGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 45170 0.66 0.317573
Target:  5'- gCGGCGGCgaugGCGCauucgcgagCAUGG-CGGCcaacuaugGCGUc -3'
miRNA:   3'- -GCCGCCGa---CGCG---------GUGCCaGCCG--------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 37419 0.66 0.317573
Target:  5'- uCGcGCGGCcguccucGuCGUCAUacGUCGGCGCGCg -3'
miRNA:   3'- -GC-CGCCGa------C-GCGGUGc-CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 34376 0.66 0.317573
Target:  5'- cCGGCGGUaaCGCCGCGagcacGUCGG-ACGg -3'
miRNA:   3'- -GCCGCCGacGCGGUGC-----CAGCCgUGCg -5'
24170 5' -63.4 NC_005263.2 + 47737 0.66 0.316091
Target:  5'- uGGCGGUUGcCGCCuguucgcgaaaGGcaUCuGGCugGCg -3'
miRNA:   3'- gCCGCCGAC-GCGGug---------CC--AG-CCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 3929 0.66 0.310215
Target:  5'- uGGCGGCaG-GCCGaccggcaGGUUGGCGcCGUu -3'
miRNA:   3'- gCCGCCGaCgCGGUg------CCAGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 8807 0.66 0.302987
Target:  5'- uCGcGCGcGCaUGCGCCugcCGGccgcUCGGCGUGCg -3'
miRNA:   3'- -GC-CGC-CG-ACGCGGu--GCC----AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 38500 0.66 0.298713
Target:  5'- uGGCGcgacgcgaugaucgcGCUGcCGCaAUGGgaCGGCACGCa -3'
miRNA:   3'- gCCGC---------------CGAC-GCGgUGCCa-GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 37992 0.66 0.295889
Target:  5'- uGGCGGCaacgaacuCGCCACGaUUGGUGcCGCa -3'
miRNA:   3'- gCCGCCGac------GCGGUGCcAGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 38578 0.66 0.291693
Target:  5'- uCGGUcGCUGcCGCgCACGGcCGcacgauucagcccgcGCACGCg -3'
miRNA:   3'- -GCCGcCGAC-GCG-GUGCCaGC---------------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17295 0.66 0.288922
Target:  5'- uGGCgcgaGGCaGuCGCCACGGcgcgcgaauUCGGCccgGCGCc -3'
miRNA:   3'- gCCG----CCGaC-GCGGUGCC---------AGCCG---UGCG- -5'
24170 5' -63.4 NC_005263.2 + 33432 0.66 0.288922
Target:  5'- -cGCGcGC-GCGUaGCGGUCGGCcacgaGCGCu -3'
miRNA:   3'- gcCGC-CGaCGCGgUGCCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 464 0.66 0.288922
Target:  5'- aCGGCGuuUGUGCCGCcgcccgcgauuGUCGGCA-GCa -3'
miRNA:   3'- -GCCGCcgACGCGGUGc----------CAGCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 21082 0.66 0.288922
Target:  5'- aGGCGGCca------GGUCGGCACGCc -3'
miRNA:   3'- gCCGCCGacgcggugCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9793 0.66 0.288922
Target:  5'- aCGGgGGCgccuCGCCGCGuG-CGGCAUaGCc -3'
miRNA:   3'- -GCCgCCGac--GCGGUGC-CaGCCGUG-CG- -5'
24170 5' -63.4 NC_005263.2 + 17521 0.66 0.288922
Target:  5'- aGGCGGCgGCuaUCACGGcaaaCGGUguGCGCg -3'
miRNA:   3'- gCCGCCGaCGc-GGUGCCa---GCCG--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.