miRNA display CGI


Results 41 - 60 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 45470 0.67 0.256013
Target:  5'- aCGcCGGCaaGCGCgaugaaccgCGCGGUCGGCcugucGCGCa -3'
miRNA:   3'- -GCcGCCGa-CGCG---------GUGCCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 29508 0.67 0.256013
Target:  5'- -cGCcGCUGCGgCGuCcGUCGGCGCGCc -3'
miRNA:   3'- gcCGcCGACGCgGU-GcCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 7020 0.67 0.268793
Target:  5'- uGGCGGC-GCGaaACGuGUCGacgaucguGCGCGCc -3'
miRNA:   3'- gCCGCCGaCGCggUGC-CAGC--------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 20126 0.67 0.275374
Target:  5'- gGGUuacGGCaaGCGCgACGGUaCGGCcguCGCg -3'
miRNA:   3'- gCCG---CCGa-CGCGgUGCCA-GCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 6058 0.67 0.282084
Target:  5'- uGGCGGCgcgcuucacgcGCGCCGacaGGaagccUUGGCGCGg -3'
miRNA:   3'- gCCGCCGa----------CGCGGUg--CC-----AGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 28222 0.67 0.256013
Target:  5'- uGGUGGcCUGCaucgGCCGCGcUCGcCGCGCu -3'
miRNA:   3'- gCCGCC-GACG----CGGUGCcAGCcGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17590 0.67 0.256013
Target:  5'- gCGGCGGCcaagGCGCgCAgGGcaucuuccagUGGCGCGg -3'
miRNA:   3'- -GCCGCCGa---CGCG-GUgCCa---------GCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 1421 0.67 0.243734
Target:  5'- uCGGCgcgcgccgccuuGGCUGCGCgcgaggcuuCGCGGcgcucgCGGCGCuGCa -3'
miRNA:   3'- -GCCG------------CCGACGCG---------GUGCCa-----GCCGUG-CG- -5'
24170 5' -63.4 NC_005263.2 + 17815 0.67 0.249811
Target:  5'- aGGCGGCcgagGaUGCCGCGcG-CGGCccgauuGCGCa -3'
miRNA:   3'- gCCGCCGa---C-GCGGUGC-CaGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 29614 0.67 0.249811
Target:  5'- aGGC-GUUGCGCUuCGGaCGGUACGa -3'
miRNA:   3'- gCCGcCGACGCGGuGCCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 3177 0.67 0.249811
Target:  5'- uGGCGcggaauaaCUGcCGCUGCGcGUCGGCgaGCGCg -3'
miRNA:   3'- gCCGCc-------GAC-GCGGUGC-CAGCCG--UGCG- -5'
24170 5' -63.4 NC_005263.2 + 17397 0.67 0.249811
Target:  5'- gGcGCGGCcgcGCGCCugGCGGgCGGUGuCGCa -3'
miRNA:   3'- gC-CGCCGa--CGCGG--UGCCaGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 23990 0.67 0.249811
Target:  5'- uCGGCGGCUacccgaaagGCGCCGCGcugcaaaguGcCGaCGCGCu -3'
miRNA:   3'- -GCCGCCGA---------CGCGGUGC---------CaGCcGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 22541 0.67 0.282084
Target:  5'- gGGCGGCgcgGaCGCCGacGUCGcGCuCGCg -3'
miRNA:   3'- gCCGCCGa--C-GCGGUgcCAGC-CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 35551 0.67 0.249811
Target:  5'- gGGCGG--GCGCUACGGcgccgcCGGC-CGCc -3'
miRNA:   3'- gCCGCCgaCGCGGUGCCa-----GCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 23379 0.68 0.230224
Target:  5'- cCGGUGaucgucguauugccGcCUGCGCCGCccGGcacguUCGGCGCGCc -3'
miRNA:   3'- -GCCGC--------------C-GACGCGGUG--CC-----AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 19088 0.68 0.220649
Target:  5'- aCGGCGucGCggUGCGCaacgcacugcCGGUCGGC-CGCg -3'
miRNA:   3'- -GCCGC--CG--ACGCGgu--------GCCAGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 11169 0.68 0.220649
Target:  5'- uGGcCGGCUGCGacaCGCGGUUaaGC-CGCu -3'
miRNA:   3'- gCC-GCCGACGCg--GUGCCAGc-CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 44638 0.68 0.20982
Target:  5'- gCGGCagcugaucGaGCUGCGCCucgAUGcGUCGcGCGCGCc -3'
miRNA:   3'- -GCCG--------C-CGACGCGG---UGC-CAGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 39100 0.68 0.215176
Target:  5'- aCGGCGaGUacgcgcgacucgUGCGCCGUGcGUCGGCGCu- -3'
miRNA:   3'- -GCCGC-CG------------ACGCGGUGC-CAGCCGUGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.