Results 61 - 80 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 47681 | 0.68 | 0.215176 |
Target: 5'- gCGGCGauccucguGCUGUGCgGCaagcugcUCGGCACGCu -3' miRNA: 3'- -GCCGC--------CGACGCGgUGcc-----AGCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 23866 | 0.68 | 0.208763 |
Target: 5'- uGGCGGCguacCGCCGCaaGGcgaagauuucaaCGGCGCGCu -3' miRNA: 3'- gCCGCCGac--GCGGUG--CCa-----------GCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 9195 | 0.68 | 0.208763 |
Target: 5'- -cGCGGgUGCGCaaACGGgcggcgcucguaCGGCGCGCg -3' miRNA: 3'- gcCGCCgACGCGg-UGCCa-----------GCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 46844 | 0.68 | 0.220649 |
Target: 5'- aGGCGGC-GCGCCAaGGa--GCACGUc -3' miRNA: 3'- gCCGCCGaCGCGGUgCCagcCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 38320 | 0.68 | 0.220649 |
Target: 5'- -cGCGGCgagGCGCCcccguucgguGCGauggaugcgaaGUCGGUGCGCa -3' miRNA: 3'- gcCGCCGa--CGCGG----------UGC-----------CAGCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 38387 | 0.68 | 0.226239 |
Target: 5'- uGGCGaacgagcgcaaGC-GCGCCgcaGCGGUCGaGCAgGCa -3' miRNA: 3'- gCCGC-----------CGaCGCGG---UGCCAGC-CGUgCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 14255 | 0.68 | 0.23195 |
Target: 5'- gGGCuGGCU-UGCgGCGGcCGGCgcaACGCg -3' miRNA: 3'- gCCG-CCGAcGCGgUGCCaGCCG---UGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 1668 | 0.68 | 0.23195 |
Target: 5'- cCGGCaGCUuuuuguagcGCGCCGCcaguucgguauuGGUCGGUugGg -3' miRNA: 3'- -GCCGcCGA---------CGCGGUG------------CCAGCCGugCg -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 27403 | 0.68 | 0.23195 |
Target: 5'- --cCGGCUGCGUCACGacCGGCGCa- -3' miRNA: 3'- gccGCCGACGCGGUGCcaGCCGUGcg -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 18164 | 0.68 | 0.236605 |
Target: 5'- uCGGCGGCgGCGUuggcggcaucgucUACGuGUCGaaccguagugaauGCGCGCa -3' miRNA: 3'- -GCCGCCGaCGCG-------------GUGC-CAGC-------------CGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 44638 | 0.68 | 0.20982 |
Target: 5'- gCGGCagcugaucGaGCUGCGCCucgAUGcGUCGcGCGCGCc -3' miRNA: 3'- -GCCG--------C-CGACGCGG---UGC-CAGC-CGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 7226 | 0.68 | 0.23195 |
Target: 5'- aGGCGaCgGCGCCauGCGGU--GCACGCg -3' miRNA: 3'- gCCGCcGaCGCGG--UGCCAgcCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 20876 | 0.68 | 0.23195 |
Target: 5'- aCGGC-GCUGCGCCAgUGGcaggaGGCGCa- -3' miRNA: 3'- -GCCGcCGACGCGGU-GCCag---CCGUGcg -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 15189 | 0.69 | 0.194439 |
Target: 5'- -cGCGaGC-GCGCCGCGcgacGUCGGCaaGCGCu -3' miRNA: 3'- gcCGC-CGaCGCGGUGC----CAGCCG--UGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 37926 | 0.69 | 0.194439 |
Target: 5'- gGGCgcaGGC-GCGCCGcCGGcagcCGGUGCGCa -3' miRNA: 3'- gCCG---CCGaCGCGGU-GCCa---GCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 44112 | 0.69 | 0.189535 |
Target: 5'- uCGGUcaGG-UGCGCUgcuCGG-CGGCGCGCg -3' miRNA: 3'- -GCCG--CCgACGCGGu--GCCaGCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 2903 | 0.69 | 0.18474 |
Target: 5'- gGGCGGCaggugGaCGCCAUaGUUGGC-CGCc -3' miRNA: 3'- gCCGCCGa----C-GCGGUGcCAGCCGuGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 45842 | 0.69 | 0.189535 |
Target: 5'- aCGGCGaacgcGCUGCGCucgaacaacuaCACGuacaUCGGCGCGUa -3' miRNA: 3'- -GCCGC-----CGACGCG-----------GUGCc---AGCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 22828 | 0.69 | 0.189535 |
Target: 5'- -cGCuGUcGCGCgCGCGGaUCGGCAUGCa -3' miRNA: 3'- gcCGcCGaCGCG-GUGCC-AGCCGUGCG- -5' |
|||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 14960 | 0.69 | 0.194439 |
Target: 5'- aGGC-GCcGCGCCAUGGcuggCGGCA-GCg -3' miRNA: 3'- gCCGcCGaCGCGGUGCCa---GCCGUgCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home