miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 44112 0.69 0.189535
Target:  5'- uCGGUcaGG-UGCGCUgcuCGG-CGGCGCGCg -3'
miRNA:   3'- -GCCG--CCgACGCGGu--GCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12484 0.69 0.18474
Target:  5'- cCGGCGGC-GCGCauuGCGGcaUCcuGCGCGCc -3'
miRNA:   3'- -GCCGCCGaCGCGg--UGCC--AGc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 15354 0.69 0.180053
Target:  5'- uCGGUcGCauUGCGCCGCGcaagCGGCAgCGCg -3'
miRNA:   3'- -GCCGcCG--ACGCGGUGCca--GCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 30268 0.69 0.189535
Target:  5'- uCGGCGaagcGCUGCGCaauCGGgccGCGCGCg -3'
miRNA:   3'- -GCCGC----CGACGCGgu-GCCagcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 2427 0.69 0.180053
Target:  5'- gCGGCaGC-GUGCCuuGGUaCGGCGCGg -3'
miRNA:   3'- -GCCGcCGaCGCGGugCCA-GCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 45842 0.69 0.189535
Target:  5'- aCGGCGaacgcGCUGCGCucgaacaacuaCACGuacaUCGGCGCGUa -3'
miRNA:   3'- -GCCGC-----CGACGCG-----------GUGCc---AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44687 0.7 0.158169
Target:  5'- uCGGCGGCcauccUGCGCgCACacGUCGGCG-GCc -3'
miRNA:   3'- -GCCGCCG-----ACGCG-GUGc-CAGCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 39344 0.7 0.158169
Target:  5'- cCGG-GGCUGgcaGCCgauucgcucgGCGG-CGGCGCGCu -3'
miRNA:   3'- -GCCgCCGACg--CGG----------UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29234 0.7 0.150108
Target:  5'- uCGGCGcGCaGCGgCGCGccgaGGCACGCg -3'
miRNA:   3'- -GCCGC-CGaCGCgGUGCcag-CCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 30655 0.7 0.166619
Target:  5'- aGGCGGCUGuCGUCgaguuucgACGG-CGaGCugGCc -3'
miRNA:   3'- gCCGCCGAC-GCGG--------UGCCaGC-CGugCG- -5'
24170 5' -63.4 NC_005263.2 + 17150 0.7 0.154091
Target:  5'- -aGCGGUcGaCGUCGCGGuguUCGGCugGCa -3'
miRNA:   3'- gcCGCCGaC-GCGGUGCC---AGCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 24938 0.7 0.162344
Target:  5'- uCGGUGGCgGCGg-ACGG-CGGUGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCggUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 821 0.7 0.170994
Target:  5'- -aGCGGaCUGCGCU----UCGGCGCGCa -3'
miRNA:   3'- gcCGCC-GACGCGGugccAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 19394 0.7 0.170994
Target:  5'- uCGGCGGC-GCGCagUACGGcaacGCGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCG--GUGCCagc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 33999 0.7 0.170994
Target:  5'- cCGGCcguguuGGCUGCGUCGCGG-C-GCGCGa -3'
miRNA:   3'- -GCCG------CCGACGCGGUGCCaGcCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 12667 0.7 0.175472
Target:  5'- uCGGcCGGC-GCGCCGgGGUCGucGUuCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgCCAGC--CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 9563 0.7 0.166619
Target:  5'- -cGCGGCU-UGCCA-GG-CGGCGCGCu -3'
miRNA:   3'- gcCGCCGAcGCGGUgCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9373 0.7 0.175472
Target:  5'- cCGGCGGCUGCGggaauuucagCGCGG-CGGCcaGCuGCu -3'
miRNA:   3'- -GCCGCCGACGCg---------GUGCCaGCCG--UG-CG- -5'
24170 5' -63.4 NC_005263.2 + 26519 0.7 0.166619
Target:  5'- gCGcGCGGCgucGaCGCCgGCGG-CGaGCACGCg -3'
miRNA:   3'- -GC-CGCCGa--C-GCGG-UGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 31254 0.7 0.154091
Target:  5'- cCGcGCGGCgcgGCGCCGggcaGGUCGaagugcugucGCACGUa -3'
miRNA:   3'- -GC-CGCCGa--CGCGGUg---CCAGC----------CGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.