miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 39713 0.75 0.072633
Target:  5'- aGGCGGC-GCGCUuccUGGUCGGCcugccuGCGCc -3'
miRNA:   3'- gCCGCCGaCGCGGu--GCCAGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 32676 0.75 0.07465
Target:  5'- uCGGCGGCgaugucgacgUGCGUCAgcaGGUCGGUcacgaGCGCa -3'
miRNA:   3'- -GCCGCCG----------ACGCGGUg--CCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 9768 0.75 0.070668
Target:  5'- cCGGUcGCcGCGUgCACGGUCGcGCGCGCa -3'
miRNA:   3'- -GCCGcCGaCGCG-GUGCCAGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 38093 0.74 0.078847
Target:  5'- gCGGCGGUgcUGCGCC-CGcaccUGGCGCGCa -3'
miRNA:   3'- -GCCGCCG--ACGCGGuGCca--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 32021 0.74 0.087927
Target:  5'- gGGCGGCgaGCGCaaauggaacgauCGCGG-CGGCACGg -3'
miRNA:   3'- gCCGCCGa-CGCG------------GUGCCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 4541 0.74 0.085568
Target:  5'- gCGGC-GCUGUGCCgACGG-CGGCauugACGCg -3'
miRNA:   3'- -GCCGcCGACGCGG-UGCCaGCCG----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 29057 0.74 0.078847
Target:  5'- cCGcGCGGC-GCGuCCuCGGggCGGCGCGCa -3'
miRNA:   3'- -GC-CGCCGaCGC-GGuGCCa-GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 20760 0.74 0.07799
Target:  5'- uGGCGGCcuguaacauggccGCGCCGCugaucGUCGGCGCGUc -3'
miRNA:   3'- gCCGCCGa------------CGCGGUGc----CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 24698 0.74 0.083042
Target:  5'- aCGGCGGC-GCGCCGaacgugcCGGgCGGCGCagGCg -3'
miRNA:   3'- -GCCGCCGaCGCGGU-------GCCaGCCGUG--CG- -5'
24170 5' -63.4 NC_005263.2 + 10163 0.73 0.092832
Target:  5'- uCGGcCGGUUGCGCaC-CGGcugccggCGGCGCGCc -3'
miRNA:   3'- -GCC-GCCGACGCG-GuGCCa------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 26201 0.73 0.095381
Target:  5'- gCGGCGGCcGCGCgauGCGG-CGGCcguuCGCg -3'
miRNA:   3'- -GCCGCCGaCGCGg--UGCCaGCCGu---GCG- -5'
24170 5' -63.4 NC_005263.2 + 22495 0.73 0.092832
Target:  5'- cCGGCGGCgGCcgGCgGCGGuUCGGCGgcUGCg -3'
miRNA:   3'- -GCCGCCGaCG--CGgUGCC-AGCCGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 1641 0.73 0.106253
Target:  5'- uCGGCGGCguagcccuggaUGCGCUgcGCGGUCGGaaauaAgGCu -3'
miRNA:   3'- -GCCGCCG-----------ACGCGG--UGCCAGCCg----UgCG- -5'
24170 5' -63.4 NC_005263.2 + 25024 0.73 0.106253
Target:  5'- gCGGUGGCUGCgGUgGCGuGUacgCGGCAgGCa -3'
miRNA:   3'- -GCCGCCGACG-CGgUGC-CA---GCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 24845 0.73 0.100679
Target:  5'- aCGGCGGUgccggUGCGCCAgcCGG-CGGCuACGg -3'
miRNA:   3'- -GCCGCCG-----ACGCGGU--GCCaGCCG-UGCg -5'
24170 5' -63.4 NC_005263.2 + 16486 0.73 0.092832
Target:  5'- aCGGC-GCUGCGCCGCG--CGGCcguCGCg -3'
miRNA:   3'- -GCCGcCGACGCGGUGCcaGCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 29282 0.72 0.112116
Target:  5'- gCGGCaaugaGCUGCacggcgGCCG-GGUCGGCAUGCg -3'
miRNA:   3'- -GCCGc----CGACG------CGGUgCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 41549 0.72 0.12476
Target:  5'- aCGcGCGGC-GCGCCGUGG-CGGCgAUGCg -3'
miRNA:   3'- -GC-CGCCGaCGCGGUGCCaGCCG-UGCG- -5'
24170 5' -63.4 NC_005263.2 + 969 0.72 0.112116
Target:  5'- gCGGCGGUcgccUGCGCguCGGaCGGCGCu- -3'
miRNA:   3'- -GCCGCCG----ACGCGguGCCaGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 36501 0.72 0.118281
Target:  5'- aGGCGaaguGCUGCGCCACuucaucgCGGgGCGCg -3'
miRNA:   3'- gCCGC----CGACGCGGUGcca----GCCgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.