Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 969 | 0.72 | 0.112116 |
Target: 5'- gCGGCGGUcgccUGCGCguCGGaCGGCGCu- -3' miRNA: 3'- -GCCGCCG----ACGCGguGCCaGCCGUGcg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 10396 | 0.71 | 0.142422 |
Target: 5'- gGGcCGGCcgGCGa-GCGGgucCGGCGCGCg -3' miRNA: 3'- gCC-GCCGa-CGCggUGCCa--GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 30460 | 0.71 | 0.146219 |
Target: 5'- gCGGCGGCcuucgcguUGCGCCACaucCGGCGCccugGCg -3' miRNA: 3'- -GCCGCCG--------ACGCGGUGccaGCCGUG----CG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 46162 | 0.71 | 0.142422 |
Target: 5'- gCGGuuGCcgGCGUCGcCGGUgcCGGCGCGCu -3' miRNA: 3'- -GCCgcCGa-CGCGGU-GCCA--GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 12100 | 0.71 | 0.138716 |
Target: 5'- gCGGCcuGGCaUGCGCaGCGG-CGcGCGCGCc -3' miRNA: 3'- -GCCG--CCG-ACGCGgUGCCaGC-CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 33999 | 0.7 | 0.170994 |
Target: 5'- cCGGCcguguuGGCUGCGUCGCGG-C-GCGCGa -3' miRNA: 3'- -GCCG------CCGACGCGGUGCCaGcCGUGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29234 | 0.7 | 0.150108 |
Target: 5'- uCGGCGcGCaGCGgCGCGccgaGGCACGCg -3' miRNA: 3'- -GCCGC-CGaCGCgGUGCcag-CCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 39344 | 0.7 | 0.158169 |
Target: 5'- cCGG-GGCUGgcaGCCgauucgcucgGCGG-CGGCGCGCu -3' miRNA: 3'- -GCCgCCGACg--CGG----------UGCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 31552 | 0.7 | 0.162344 |
Target: 5'- uGGCGucGCUGC-CCA-GG-CGGCGCGCc -3' miRNA: 3'- gCCGC--CGACGcGGUgCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 30655 | 0.7 | 0.166619 |
Target: 5'- aGGCGGCUGuCGUCgaguuucgACGG-CGaGCugGCc -3' miRNA: 3'- gCCGCCGAC-GCGG--------UGCCaGC-CGugCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 44687 | 0.7 | 0.158169 |
Target: 5'- uCGGCGGCcauccUGCGCgCACacGUCGGCG-GCc -3' miRNA: 3'- -GCCGCCG-----ACGCG-GUGc-CAGCCGUgCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 9563 | 0.7 | 0.166619 |
Target: 5'- -cGCGGCU-UGCCA-GG-CGGCGCGCu -3' miRNA: 3'- gcCGCCGAcGCGGUgCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17150 | 0.7 | 0.154091 |
Target: 5'- -aGCGGUcGaCGUCGCGGuguUCGGCugGCa -3' miRNA: 3'- gcCGCCGaC-GCGGUGCC---AGCCGugCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 31254 | 0.7 | 0.154091 |
Target: 5'- cCGcGCGGCgcgGCGCCGggcaGGUCGaagugcugucGCACGUa -3' miRNA: 3'- -GC-CGCCGa--CGCGGUg---CCAGC----------CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 24938 | 0.7 | 0.162344 |
Target: 5'- uCGGUGGCgGCGg-ACGG-CGGUGCGCg -3' miRNA: 3'- -GCCGCCGaCGCggUGCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 821 | 0.7 | 0.170994 |
Target: 5'- -aGCGGaCUGCGCU----UCGGCGCGCa -3' miRNA: 3'- gcCGCC-GACGCGGugccAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 19394 | 0.7 | 0.170994 |
Target: 5'- uCGGCGGC-GCGCagUACGGcaacGCGCGCg -3' miRNA: 3'- -GCCGCCGaCGCG--GUGCCagc-CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 26519 | 0.7 | 0.166619 |
Target: 5'- gCGcGCGGCgucGaCGCCgGCGG-CGaGCACGCg -3' miRNA: 3'- -GC-CGCCGa--C-GCGG-UGCCaGC-CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 12667 | 0.7 | 0.175472 |
Target: 5'- uCGGcCGGC-GCGCCGgGGUCGucGUuCGCg -3' miRNA: 3'- -GCC-GCCGaCGCGGUgCCAGC--CGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 9373 | 0.7 | 0.175472 |
Target: 5'- cCGGCGGCUGCGggaauuucagCGCGG-CGGCcaGCuGCu -3' miRNA: 3'- -GCCGCCGACGCg---------GUGCCaGCCG--UG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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