miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 24560 1.09 0.000144
Target:  5'- gCGGCGGCUGCGCCACGGUCGGCACGCc -3'
miRNA:   3'- -GCCGCCGACGCGGUGCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17755 0.84 0.014359
Target:  5'- cCGGCGGCaGCgcgGCCGCGcUCGGCACGCg -3'
miRNA:   3'- -GCCGCCGaCG---CGGUGCcAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 21164 0.82 0.018514
Target:  5'- cCGGCGGCUaCGCCACGGggccggacgCGGaCGCGCg -3'
miRNA:   3'- -GCCGCCGAcGCGGUGCCa--------GCC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 24791 0.8 0.026694
Target:  5'- uCGGCGGCU-CGCCGgGcGUCGGCgGCGCg -3'
miRNA:   3'- -GCCGCCGAcGCGGUgC-CAGCCG-UGCG- -5'
24170 5' -63.4 NC_005263.2 + 38851 0.8 0.029866
Target:  5'- gCGGacuCGaGCgGCGUCACGGUCGGCACGUu -3'
miRNA:   3'- -GCC---GC-CGaCGCGGUGCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 2289 0.79 0.032485
Target:  5'- uCGGCaGGUcgUGCGCCGUGGcCGGCACGCc -3'
miRNA:   3'- -GCCG-CCG--ACGCGGUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 43244 0.78 0.038419
Target:  5'- gCGGCGGCaGCGgCAuCGGcaCGGCGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCgGU-GCCa-GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 35522 0.78 0.038419
Target:  5'- uGGCGcGCcgacUGCGCC-CGG-CGGCGCGCg -3'
miRNA:   3'- gCCGC-CG----ACGCGGuGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 42022 0.78 0.041772
Target:  5'- gCGGcCGGCcGCGCCAaggcuuccuGUCGGCGCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgc-------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 6616 0.78 0.044164
Target:  5'- uCGGCGGC-GCGCUcggcGCGGUCGaGCAguCGCg -3'
miRNA:   3'- -GCCGCCGaCGCGG----UGCCAGC-CGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 41068 0.77 0.049358
Target:  5'- uGGCGcGaUGCGCCAUccGUCGGCGCGCg -3'
miRNA:   3'- gCCGC-CgACGCGGUGc-CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 18632 0.77 0.049358
Target:  5'- aGGUGGCaacccggGCGCCGCuGG-CGGUACGCu -3'
miRNA:   3'- gCCGCCGa------CGCGGUG-CCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 21104 0.77 0.050606
Target:  5'- gGGCGGCgacgagcccgGCGCaGCGGgugcugcUCGGCGCGCa -3'
miRNA:   3'- gCCGCCGa---------CGCGgUGCC-------AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 20690 0.77 0.050606
Target:  5'- uCGGCGGCgcgaaaccUGCGCCGgucgugacgcagcCGGUCaGCGCGCc -3'
miRNA:   3'- -GCCGCCG--------ACGCGGU-------------GCCAGcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 27919 0.76 0.055144
Target:  5'- aCGGCGGC-GCGUCGCc--CGGCGCGCu -3'
miRNA:   3'- -GCCGCCGaCGCGGUGccaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 14440 0.76 0.059746
Target:  5'- aCGGCGuGCgcgcGCGCCucuuucgagccgaGCGG-CGGCACGCc -3'
miRNA:   3'- -GCCGC-CGa---CGCGG-------------UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 47304 0.76 0.061587
Target:  5'- uCGGUc-CUGCGCCgGCGGcCGGCACGCu -3'
miRNA:   3'- -GCCGccGACGCGG-UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12557 0.76 0.062787
Target:  5'- cCGGCGGCgccguaGCGCCcgcccGCGcgccgccgggcgcaGUCGGCGCGCc -3'
miRNA:   3'- -GCCGCCGa-----CGCGG-----UGC--------------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 27372 0.76 0.063308
Target:  5'- gCGaGCGGC-GCgGCgGCGGcCGGCGCGCu -3'
miRNA:   3'- -GC-CGCCGaCG-CGgUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 14093 0.75 0.066707
Target:  5'- uCGGCugguaccGGCUGCGCgGCGGUCGcCGuCGCg -3'
miRNA:   3'- -GCCG-------CCGACGCGgUGCCAGCcGU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.