miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 41549 0.72 0.12476
Target:  5'- aCGcGCGGC-GCGCCGUGG-CGGCgAUGCg -3'
miRNA:   3'- -GC-CGCCGaCGCGGUGCCaGCCG-UGCG- -5'
24170 5' -63.4 NC_005263.2 + 12100 0.71 0.138716
Target:  5'- gCGGCcuGGCaUGCGCaGCGG-CGcGCGCGCc -3'
miRNA:   3'- -GCCG--CCG-ACGCGgUGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 46162 0.71 0.142422
Target:  5'- gCGGuuGCcgGCGUCGcCGGUgcCGGCGCGCu -3'
miRNA:   3'- -GCCgcCGa-CGCGGU-GCCA--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 10396 0.71 0.142422
Target:  5'- gGGcCGGCcgGCGa-GCGGgucCGGCGCGCg -3'
miRNA:   3'- gCC-GCCGa-CGCggUGCCa--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 30460 0.71 0.146219
Target:  5'- gCGGCGGCcuucgcguUGCGCCACaucCGGCGCccugGCg -3'
miRNA:   3'- -GCCGCCG--------ACGCGGUGccaGCCGUG----CG- -5'
24170 5' -63.4 NC_005263.2 + 29234 0.7 0.150108
Target:  5'- uCGGCGcGCaGCGgCGCGccgaGGCACGCg -3'
miRNA:   3'- -GCCGC-CGaCGCgGUGCcag-CCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17150 0.7 0.154091
Target:  5'- -aGCGGUcGaCGUCGCGGuguUCGGCugGCa -3'
miRNA:   3'- gcCGCCGaC-GCGGUGCC---AGCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 31254 0.7 0.154091
Target:  5'- cCGcGCGGCgcgGCGCCGggcaGGUCGaagugcugucGCACGUa -3'
miRNA:   3'- -GC-CGCCGa--CGCGGUg---CCAGC----------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44687 0.7 0.158169
Target:  5'- uCGGCGGCcauccUGCGCgCACacGUCGGCG-GCc -3'
miRNA:   3'- -GCCGCCG-----ACGCG-GUGc-CAGCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 39344 0.7 0.158169
Target:  5'- cCGG-GGCUGgcaGCCgauucgcucgGCGG-CGGCGCGCu -3'
miRNA:   3'- -GCCgCCGACg--CGG----------UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 31552 0.7 0.162344
Target:  5'- uGGCGucGCUGC-CCA-GG-CGGCGCGCc -3'
miRNA:   3'- gCCGC--CGACGcGGUgCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 24938 0.7 0.162344
Target:  5'- uCGGUGGCgGCGg-ACGG-CGGUGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCggUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 30655 0.7 0.166619
Target:  5'- aGGCGGCUGuCGUCgaguuucgACGG-CGaGCugGCc -3'
miRNA:   3'- gCCGCCGAC-GCGG--------UGCCaGC-CGugCG- -5'
24170 5' -63.4 NC_005263.2 + 9563 0.7 0.166619
Target:  5'- -cGCGGCU-UGCCA-GG-CGGCGCGCu -3'
miRNA:   3'- gcCGCCGAcGCGGUgCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 26519 0.7 0.166619
Target:  5'- gCGcGCGGCgucGaCGCCgGCGG-CGaGCACGCg -3'
miRNA:   3'- -GC-CGCCGa--C-GCGG-UGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 821 0.7 0.170994
Target:  5'- -aGCGGaCUGCGCU----UCGGCGCGCa -3'
miRNA:   3'- gcCGCC-GACGCGGugccAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 19394 0.7 0.170994
Target:  5'- uCGGCGGC-GCGCagUACGGcaacGCGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCG--GUGCCagc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 33999 0.7 0.170994
Target:  5'- cCGGCcguguuGGCUGCGUCGCGG-C-GCGCGa -3'
miRNA:   3'- -GCCG------CCGACGCGGUGCCaGcCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 12667 0.7 0.175472
Target:  5'- uCGGcCGGC-GCGCCGgGGUCGucGUuCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgCCAGC--CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 9373 0.7 0.175472
Target:  5'- cCGGCGGCUGCGggaauuucagCGCGG-CGGCcaGCuGCu -3'
miRNA:   3'- -GCCGCCGACGCg---------GUGCCaGCCG--UG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.