miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 15354 0.69 0.180053
Target:  5'- uCGGUcGCauUGCGCCGCGcaagCGGCAgCGCg -3'
miRNA:   3'- -GCCGcCG--ACGCGGUGCca--GCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 2427 0.69 0.180053
Target:  5'- gCGGCaGC-GUGCCuuGGUaCGGCGCGg -3'
miRNA:   3'- -GCCGcCGaCGCGGugCCA-GCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 46173 0.69 0.180053
Target:  5'- gGGCGGCgaGUGUC-CGGUaccagCGGaCACGCu -3'
miRNA:   3'- gCCGCCGa-CGCGGuGCCA-----GCC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12484 0.69 0.18474
Target:  5'- cCGGCGGC-GCGCauuGCGGcaUCcuGCGCGCc -3'
miRNA:   3'- -GCCGCCGaCGCGg--UGCC--AGc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 2903 0.69 0.18474
Target:  5'- gGGCGGCaggugGaCGCCAUaGUUGGC-CGCc -3'
miRNA:   3'- gCCGCCGa----C-GCGGUGcCAGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 22828 0.69 0.189535
Target:  5'- -cGCuGUcGCGCgCGCGGaUCGGCAUGCa -3'
miRNA:   3'- gcCGcCGaCGCG-GUGCC-AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44112 0.69 0.189535
Target:  5'- uCGGUcaGG-UGCGCUgcuCGG-CGGCGCGCg -3'
miRNA:   3'- -GCCG--CCgACGCGGu--GCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 45842 0.69 0.189535
Target:  5'- aCGGCGaacgcGCUGCGCucgaacaacuaCACGuacaUCGGCGCGUa -3'
miRNA:   3'- -GCCGC-----CGACGCG-----------GUGCc---AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 30268 0.69 0.189535
Target:  5'- uCGGCGaagcGCUGCGCaauCGGgccGCGCGCg -3'
miRNA:   3'- -GCCGC----CGACGCGgu-GCCagcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 15189 0.69 0.194439
Target:  5'- -cGCGaGC-GCGCCGCGcgacGUCGGCaaGCGCu -3'
miRNA:   3'- gcCGC-CGaCGCGGUGC----CAGCCG--UGCG- -5'
24170 5' -63.4 NC_005263.2 + 14960 0.69 0.194439
Target:  5'- aGGC-GCcGCGCCAUGGcuggCGGCA-GCg -3'
miRNA:   3'- gCCGcCGaCGCGGUGCCa---GCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 37926 0.69 0.194439
Target:  5'- gGGCgcaGGC-GCGCCGcCGGcagcCGGUGCGCa -3'
miRNA:   3'- gCCG---CCGaCGCGGU-GCCa---GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 10851 0.69 0.197434
Target:  5'- uGGUgcgGGCUacgGCGUCGCGGcggaacucggcacCGGCGCGCg -3'
miRNA:   3'- gCCG---CCGA---CGCGGUGCCa------------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 23866 0.68 0.208763
Target:  5'- uGGCGGCguacCGCCGCaaGGcgaagauuucaaCGGCGCGCu -3'
miRNA:   3'- gCCGCCGac--GCGGUG--CCa-----------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9195 0.68 0.208763
Target:  5'- -cGCGGgUGCGCaaACGGgcggcgcucguaCGGCGCGCg -3'
miRNA:   3'- gcCGCCgACGCGg-UGCCa-----------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29150 0.68 0.20982
Target:  5'- uCGuGcCGGCUGCGCU-CGuaacCGGCGCGCu -3'
miRNA:   3'- -GC-C-GCCGACGCGGuGCca--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44638 0.68 0.20982
Target:  5'- gCGGCagcugaucGaGCUGCGCCucgAUGcGUCGcGCGCGCc -3'
miRNA:   3'- -GCCG--------C-CGACGCGG---UGC-CAGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 39100 0.68 0.215176
Target:  5'- aCGGCGaGUacgcgcgacucgUGCGCCGUGcGUCGGCGCu- -3'
miRNA:   3'- -GCCGC-CG------------ACGCGGUGC-CAGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 47681 0.68 0.215176
Target:  5'- gCGGCGauccucguGCUGUGCgGCaagcugcUCGGCACGCu -3'
miRNA:   3'- -GCCGC--------CGACGCGgUGcc-----AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 46844 0.68 0.220649
Target:  5'- aGGCGGC-GCGCCAaGGa--GCACGUc -3'
miRNA:   3'- gCCGCCGaCGCGGUgCCagcCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.