miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 21082 0.66 0.288922
Target:  5'- aGGCGGCca------GGUCGGCACGCc -3'
miRNA:   3'- gCCGCCGacgcggugCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 16583 0.67 0.282084
Target:  5'- cCGGCGGCgacGCGuUCGcCGGgcucGCGCGCg -3'
miRNA:   3'- -GCCGCCGa--CGC-GGU-GCCagc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44031 0.67 0.282084
Target:  5'- gGGUGGCgacuuCGCCGCGuuccguggCGGCugGUg -3'
miRNA:   3'- gCCGCCGac---GCGGUGCca------GCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 22541 0.67 0.282084
Target:  5'- gGGCGGCgcgGaCGCCGacGUCGcGCuCGCg -3'
miRNA:   3'- gCCGCCGa--C-GCGGUgcCAGC-CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 6058 0.67 0.282084
Target:  5'- uGGCGGCgcgcuucacgcGCGCCGacaGGaagccUUGGCGCGg -3'
miRNA:   3'- gCCGCCGa----------CGCGGUg--CC-----AGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 183 0.67 0.282084
Target:  5'- gGGCGaGCccgcugcccgUGCGCC-CGGccgcUUGGUugGCa -3'
miRNA:   3'- gCCGC-CG----------ACGCGGuGCC----AGCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 1257 0.67 0.280057
Target:  5'- aCGGCaugacgugcuccuuGGC-GCGCCGCc--UGGCGCGCg -3'
miRNA:   3'- -GCCG--------------CCGaCGCGGUGccaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 20126 0.67 0.275374
Target:  5'- gGGUuacGGCaaGCGCgACGGUaCGGCcguCGCg -3'
miRNA:   3'- gCCG---CCGa-CGCGgUGCCA-GCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 9418 0.67 0.275374
Target:  5'- -cGCGGCUGCGgCGCuGUUaGcCGCGCa -3'
miRNA:   3'- gcCGCCGACGCgGUGcCAGcC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 11392 0.67 0.268793
Target:  5'- -cGCGGcCUGCGCgCACguGGUUcgGGCGCGg -3'
miRNA:   3'- gcCGCC-GACGCG-GUG--CCAG--CCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 36935 0.67 0.268793
Target:  5'- cCGGaCGGCacGCGCUAUGcUCGGacaaaACGCa -3'
miRNA:   3'- -GCC-GCCGa-CGCGGUGCcAGCCg----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 7020 0.67 0.268793
Target:  5'- uGGCGGC-GCGaaACGuGUCGacgaucguGCGCGCc -3'
miRNA:   3'- gCCGCCGaCGCggUGC-CAGC--------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 27726 0.67 0.26234
Target:  5'- uGGCGaGUUGU---ACGGugUCGGCGCGCg -3'
miRNA:   3'- gCCGC-CGACGcggUGCC--AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 15697 0.67 0.261701
Target:  5'- cCGGCGaGCUcgcaGCGaCUACGGgCGGUucgaccaGCGCg -3'
miRNA:   3'- -GCCGC-CGA----CGC-GGUGCCaGCCG-------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 41752 0.67 0.256013
Target:  5'- gGGCGGCacgGCGCgAUcaacgaGGagaUCGGCGCGg -3'
miRNA:   3'- gCCGCCGa--CGCGgUG------CC---AGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 28222 0.67 0.256013
Target:  5'- uGGUGGcCUGCaucgGCCGCGcUCGcCGCGCu -3'
miRNA:   3'- gCCGCC-GACG----CGGUGCcAGCcGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17590 0.67 0.256013
Target:  5'- gCGGCGGCcaagGCGCgCAgGGcaucuuccagUGGCGCGg -3'
miRNA:   3'- -GCCGCCGa---CGCG-GUgCCa---------GCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 18574 0.67 0.256013
Target:  5'- cCGGUGGCgucccgGCCACuGcUGGCGCGCc -3'
miRNA:   3'- -GCCGCCGacg---CGGUGcCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 45470 0.67 0.256013
Target:  5'- aCGcCGGCaaGCGCgaugaaccgCGCGGUCGGCcugucGCGCa -3'
miRNA:   3'- -GCcGCCGa-CGCG---------GUGCCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 24101 0.67 0.256013
Target:  5'- gCGGCGGCUacGUGCCgggcuaucaguACGGcaccaCGGCACu- -3'
miRNA:   3'- -GCCGCCGA--CGCGG-----------UGCCa----GCCGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.