Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 45470 | 0.67 | 0.256013 |
Target: 5'- aCGcCGGCaaGCGCgaugaaccgCGCGGUCGGCcugucGCGCa -3' miRNA: 3'- -GCcGCCGa-CGCG---------GUGCCAGCCG-----UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 18574 | 0.67 | 0.256013 |
Target: 5'- cCGGUGGCgucccgGCCACuGcUGGCGCGCc -3' miRNA: 3'- -GCCGCCGacg---CGGUGcCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29508 | 0.67 | 0.256013 |
Target: 5'- -cGCcGCUGCGgCGuCcGUCGGCGCGCc -3' miRNA: 3'- gcCGcCGACGCgGU-GcCAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 5043 | 0.67 | 0.255387 |
Target: 5'- cCGGCGGCcgacuauUG-GCCGacGUCGGCGuCGCg -3' miRNA: 3'- -GCCGCCG-------ACgCGGUgcCAGCCGU-GCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 3285 | 0.67 | 0.249811 |
Target: 5'- aGGCauacGCccuuucuccuUGUGCgCGCGG-CGGCGCGCg -3' miRNA: 3'- gCCGc---CG----------ACGCG-GUGCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 44770 | 0.67 | 0.249811 |
Target: 5'- -cGCGcGCgGCGCC--GG-CGGCGCGCa -3' miRNA: 3'- gcCGC-CGaCGCGGugCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 32886 | 0.67 | 0.249811 |
Target: 5'- gGGCGGCgaguuucgugGCGUCGgcguCGG-CGGCcCGCu -3' miRNA: 3'- gCCGCCGa---------CGCGGU----GCCaGCCGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 40058 | 0.67 | 0.249811 |
Target: 5'- aCGGaacuCGcGCgGCGCCACGGcgCGG-ACGCc -3' miRNA: 3'- -GCC----GC-CGaCGCGGUGCCa-GCCgUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 35551 | 0.67 | 0.249811 |
Target: 5'- gGGCGG--GCGCUACGGcgccgcCGGC-CGCc -3' miRNA: 3'- gCCGCCgaCGCGGUGCCa-----GCCGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 23990 | 0.67 | 0.249811 |
Target: 5'- uCGGCGGCUacccgaaagGCGCCGCGcugcaaaguGcCGaCGCGCu -3' miRNA: 3'- -GCCGCCGA---------CGCGGUGC---------CaGCcGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17397 | 0.67 | 0.249811 |
Target: 5'- gGcGCGGCcgcGCGCCugGCGGgCGGUGuCGCa -3' miRNA: 3'- gC-CGCCGa--CGCGG--UGCCaGCCGU-GCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 3177 | 0.67 | 0.249811 |
Target: 5'- uGGCGcggaauaaCUGcCGCUGCGcGUCGGCgaGCGCg -3' miRNA: 3'- gCCGCc-------GAC-GCGGUGC-CAGCCG--UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29614 | 0.67 | 0.249811 |
Target: 5'- aGGC-GUUGCGCUuCGGaCGGUACGa -3' miRNA: 3'- gCCGcCGACGCGGuGCCaGCCGUGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17815 | 0.67 | 0.249811 |
Target: 5'- aGGCGGCcgagGaUGCCGCGcG-CGGCccgauuGCGCa -3' miRNA: 3'- gCCGCCGa---C-GCGGUGC-CaGCCG------UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 1421 | 0.67 | 0.243734 |
Target: 5'- uCGGCgcgcgccgccuuGGCUGCGCgcgaggcuuCGCGGcgcucgCGGCGCuGCa -3' miRNA: 3'- -GCCG------------CCGACGCG---------GUGCCa-----GCCGUG-CG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 18164 | 0.68 | 0.236605 |
Target: 5'- uCGGCGGCgGCGUuggcggcaucgucUACGuGUCGaaccguagugaauGCGCGCa -3' miRNA: 3'- -GCCGCCGaCGCG-------------GUGC-CAGC-------------CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27403 | 0.68 | 0.23195 |
Target: 5'- --cCGGCUGCGUCACGacCGGCGCa- -3' miRNA: 3'- gccGCCGACGCGGUGCcaGCCGUGcg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 20876 | 0.68 | 0.23195 |
Target: 5'- aCGGC-GCUGCGCCAgUGGcaggaGGCGCa- -3' miRNA: 3'- -GCCGcCGACGCGGU-GCCag---CCGUGcg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 1668 | 0.68 | 0.23195 |
Target: 5'- cCGGCaGCUuuuuguagcGCGCCGCcaguucgguauuGGUCGGUugGg -3' miRNA: 3'- -GCCGcCGA---------CGCGGUG------------CCAGCCGugCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 14255 | 0.68 | 0.23195 |
Target: 5'- gGGCuGGCU-UGCgGCGGcCGGCgcaACGCg -3' miRNA: 3'- gCCG-CCGAcGCGgUGCCaGCCG---UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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