miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 183 0.67 0.282084
Target:  5'- gGGCGaGCccgcugcccgUGCGCC-CGGccgcUUGGUugGCa -3'
miRNA:   3'- gCCGC-CG----------ACGCGGuGCC----AGCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 464 0.66 0.288922
Target:  5'- aCGGCGuuUGUGCCGCcgcccgcgauuGUCGGCA-GCa -3'
miRNA:   3'- -GCCGCcgACGCGGUGc----------CAGCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 821 0.7 0.170994
Target:  5'- -aGCGGaCUGCGCU----UCGGCGCGCa -3'
miRNA:   3'- gcCGCC-GACGCGGugccAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 969 0.72 0.112116
Target:  5'- gCGGCGGUcgccUGCGCguCGGaCGGCGCu- -3'
miRNA:   3'- -GCCGCCG----ACGCGguGCCaGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 1257 0.67 0.280057
Target:  5'- aCGGCaugacgugcuccuuGGC-GCGCCGCc--UGGCGCGCg -3'
miRNA:   3'- -GCCG--------------CCGaCGCGGUGccaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 1421 0.67 0.243734
Target:  5'- uCGGCgcgcgccgccuuGGCUGCGCgcgaggcuuCGCGGcgcucgCGGCGCuGCa -3'
miRNA:   3'- -GCCG------------CCGACGCG---------GUGCCa-----GCCGUG-CG- -5'
24170 5' -63.4 NC_005263.2 + 1641 0.73 0.106253
Target:  5'- uCGGCGGCguagcccuggaUGCGCUgcGCGGUCGGaaauaAgGCu -3'
miRNA:   3'- -GCCGCCG-----------ACGCGG--UGCCAGCCg----UgCG- -5'
24170 5' -63.4 NC_005263.2 + 1668 0.68 0.23195
Target:  5'- cCGGCaGCUuuuuguagcGCGCCGCcaguucgguauuGGUCGGUugGg -3'
miRNA:   3'- -GCCGcCGA---------CGCGGUG------------CCAGCCGugCg -5'
24170 5' -63.4 NC_005263.2 + 2289 0.79 0.032485
Target:  5'- uCGGCaGGUcgUGCGCCGUGGcCGGCACGCc -3'
miRNA:   3'- -GCCG-CCG--ACGCGGUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 2427 0.69 0.180053
Target:  5'- gCGGCaGC-GUGCCuuGGUaCGGCGCGg -3'
miRNA:   3'- -GCCGcCGaCGCGGugCCA-GCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 2903 0.69 0.18474
Target:  5'- gGGCGGCaggugGaCGCCAUaGUUGGC-CGCc -3'
miRNA:   3'- gCCGCCGa----C-GCGGUGcCAGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 3177 0.67 0.249811
Target:  5'- uGGCGcggaauaaCUGcCGCUGCGcGUCGGCgaGCGCg -3'
miRNA:   3'- gCCGCc-------GAC-GCGGUGC-CAGCCG--UGCG- -5'
24170 5' -63.4 NC_005263.2 + 3285 0.67 0.249811
Target:  5'- aGGCauacGCccuuucuccuUGUGCgCGCGG-CGGCGCGCg -3'
miRNA:   3'- gCCGc---CG----------ACGCG-GUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 3929 0.66 0.310215
Target:  5'- uGGCGGCaG-GCCGaccggcaGGUUGGCGcCGUu -3'
miRNA:   3'- gCCGCCGaCgCGGUg------CCAGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 4372 0.66 0.288922
Target:  5'- uGcGCGGUcaGCGCaUGCGGUCGGCGaauacuUGCa -3'
miRNA:   3'- gC-CGCCGa-CGCG-GUGCCAGCCGU------GCG- -5'
24170 5' -63.4 NC_005263.2 + 4541 0.74 0.085568
Target:  5'- gCGGC-GCUGUGCCgACGG-CGGCauugACGCg -3'
miRNA:   3'- -GCCGcCGACGCGG-UGCCaGCCG----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 5043 0.67 0.255387
Target:  5'- cCGGCGGCcgacuauUG-GCCGacGUCGGCGuCGCg -3'
miRNA:   3'- -GCCGCCG-------ACgCGGUgcCAGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 6058 0.67 0.282084
Target:  5'- uGGCGGCgcgcuucacgcGCGCCGacaGGaagccUUGGCGCGg -3'
miRNA:   3'- gCCGCCGa----------CGCGGUg--CC-----AGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 6616 0.78 0.044164
Target:  5'- uCGGCGGC-GCGCUcggcGCGGUCGaGCAguCGCg -3'
miRNA:   3'- -GCCGCCGaCGCGG----UGCCAGC-CGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 7020 0.67 0.268793
Target:  5'- uGGCGGC-GCGaaACGuGUCGacgaucguGCGCGCc -3'
miRNA:   3'- gCCGCCGaCGCggUGC-CAGC--------CGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.