miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 7226 0.68 0.23195
Target:  5'- aGGCGaCgGCGCCauGCGGU--GCACGCg -3'
miRNA:   3'- gCCGCcGaCGCGG--UGCCAgcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 8807 0.66 0.302987
Target:  5'- uCGcGCGcGCaUGCGCCugcCGGccgcUCGGCGUGCg -3'
miRNA:   3'- -GC-CGC-CG-ACGCGGu--GCC----AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9195 0.68 0.208763
Target:  5'- -cGCGGgUGCGCaaACGGgcggcgcucguaCGGCGCGCg -3'
miRNA:   3'- gcCGCCgACGCGg-UGCCa-----------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9373 0.7 0.175472
Target:  5'- cCGGCGGCUGCGggaauuucagCGCGG-CGGCcaGCuGCu -3'
miRNA:   3'- -GCCGCCGACGCg---------GUGCCaGCCG--UG-CG- -5'
24170 5' -63.4 NC_005263.2 + 9418 0.67 0.275374
Target:  5'- -cGCGGCUGCGgCGCuGUUaGcCGCGCa -3'
miRNA:   3'- gcCGCCGACGCgGUGcCAGcC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9563 0.7 0.166619
Target:  5'- -cGCGGCU-UGCCA-GG-CGGCGCGCu -3'
miRNA:   3'- gcCGCCGAcGCGGUgCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9768 0.75 0.070668
Target:  5'- cCGGUcGCcGCGUgCACGGUCGcGCGCGCa -3'
miRNA:   3'- -GCCGcCGaCGCG-GUGCCAGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9793 0.66 0.288922
Target:  5'- aCGGgGGCgccuCGCCGCGuG-CGGCAUaGCc -3'
miRNA:   3'- -GCCgCCGac--GCGGUGC-CaGCCGUG-CG- -5'
24170 5' -63.4 NC_005263.2 + 10163 0.73 0.092832
Target:  5'- uCGGcCGGUUGCGCaC-CGGcugccggCGGCGCGCc -3'
miRNA:   3'- -GCC-GCCGACGCG-GuGCCa------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 10396 0.71 0.142422
Target:  5'- gGGcCGGCcgGCGa-GCGGgucCGGCGCGCg -3'
miRNA:   3'- gCC-GCCGa-CGCggUGCCa--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 10851 0.69 0.197434
Target:  5'- uGGUgcgGGCUacgGCGUCGCGGcggaacucggcacCGGCGCGCg -3'
miRNA:   3'- gCCG---CCGA---CGCGGUGCCa------------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 11169 0.68 0.220649
Target:  5'- uGGcCGGCUGCGacaCGCGGUUaaGC-CGCu -3'
miRNA:   3'- gCC-GCCGACGCg--GUGCCAGc-CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 11392 0.67 0.268793
Target:  5'- -cGCGGcCUGCGCgCACguGGUUcgGGCGCGg -3'
miRNA:   3'- gcCGCC-GACGCG-GUG--CCAG--CCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 12100 0.71 0.138716
Target:  5'- gCGGCcuGGCaUGCGCaGCGG-CGcGCGCGCc -3'
miRNA:   3'- -GCCG--CCG-ACGCGgUGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12484 0.69 0.18474
Target:  5'- cCGGCGGC-GCGCauuGCGGcaUCcuGCGCGCc -3'
miRNA:   3'- -GCCGCCGaCGCGg--UGCC--AGc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12557 0.76 0.062787
Target:  5'- cCGGCGGCgccguaGCGCCcgcccGCGcgccgccgggcgcaGUCGGCGCGCc -3'
miRNA:   3'- -GCCGCCGa-----CGCGG-----UGC--------------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12667 0.7 0.175472
Target:  5'- uCGGcCGGC-GCGCCGgGGUCGucGUuCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgCCAGC--CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 14093 0.75 0.066707
Target:  5'- uCGGCugguaccGGCUGCGCgGCGGUCGcCGuCGCg -3'
miRNA:   3'- -GCCG-------CCGACGCGgUGCCAGCcGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 14255 0.68 0.23195
Target:  5'- gGGCuGGCU-UGCgGCGGcCGGCgcaACGCg -3'
miRNA:   3'- gCCG-CCGAcGCGgUGCCaGCCG---UGCG- -5'
24170 5' -63.4 NC_005263.2 + 14440 0.76 0.059746
Target:  5'- aCGGCGuGCgcgcGCGCCucuuucgagccgaGCGG-CGGCACGCc -3'
miRNA:   3'- -GCCGC-CGa---CGCGG-------------UGCCaGCCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.