miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 14960 0.69 0.194439
Target:  5'- aGGC-GCcGCGCCAUGGcuggCGGCA-GCg -3'
miRNA:   3'- gCCGcCGaCGCGGUGCCa---GCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 15189 0.69 0.194439
Target:  5'- -cGCGaGC-GCGCCGCGcgacGUCGGCaaGCGCu -3'
miRNA:   3'- gcCGC-CGaCGCGGUGC----CAGCCG--UGCG- -5'
24170 5' -63.4 NC_005263.2 + 15354 0.69 0.180053
Target:  5'- uCGGUcGCauUGCGCCGCGcaagCGGCAgCGCg -3'
miRNA:   3'- -GCCGcCG--ACGCGGUGCca--GCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 15697 0.67 0.261701
Target:  5'- cCGGCGaGCUcgcaGCGaCUACGGgCGGUucgaccaGCGCg -3'
miRNA:   3'- -GCCGC-CGA----CGC-GGUGCCaGCCG-------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 16486 0.73 0.092832
Target:  5'- aCGGC-GCUGCGCCGCG--CGGCcguCGCg -3'
miRNA:   3'- -GCCGcCGACGCGGUGCcaGCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 16583 0.67 0.282084
Target:  5'- cCGGCGGCgacGCGuUCGcCGGgcucGCGCGCg -3'
miRNA:   3'- -GCCGCCGa--CGC-GGU-GCCagc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17150 0.7 0.154091
Target:  5'- -aGCGGUcGaCGUCGCGGuguUCGGCugGCa -3'
miRNA:   3'- gcCGCCGaC-GCGGUGCC---AGCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 17295 0.66 0.288922
Target:  5'- uGGCgcgaGGCaGuCGCCACGGcgcgcgaauUCGGCccgGCGCc -3'
miRNA:   3'- gCCG----CCGaC-GCGGUGCC---------AGCCG---UGCG- -5'
24170 5' -63.4 NC_005263.2 + 17397 0.67 0.249811
Target:  5'- gGcGCGGCcgcGCGCCugGCGGgCGGUGuCGCa -3'
miRNA:   3'- gC-CGCCGa--CGCGG--UGCCaGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 17521 0.66 0.288922
Target:  5'- aGGCGGCgGCuaUCACGGcaaaCGGUguGCGCg -3'
miRNA:   3'- gCCGCCGaCGc-GGUGCCa---GCCG--UGCG- -5'
24170 5' -63.4 NC_005263.2 + 17590 0.67 0.256013
Target:  5'- gCGGCGGCcaagGCGCgCAgGGcaucuuccagUGGCGCGg -3'
miRNA:   3'- -GCCGCCGa---CGCG-GUgCCa---------GCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 17755 0.84 0.014359
Target:  5'- cCGGCGGCaGCgcgGCCGCGcUCGGCACGCg -3'
miRNA:   3'- -GCCGCCGaCG---CGGUGCcAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17815 0.67 0.249811
Target:  5'- aGGCGGCcgagGaUGCCGCGcG-CGGCccgauuGCGCa -3'
miRNA:   3'- gCCGCCGa---C-GCGGUGC-CaGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 18164 0.68 0.236605
Target:  5'- uCGGCGGCgGCGUuggcggcaucgucUACGuGUCGaaccguagugaauGCGCGCa -3'
miRNA:   3'- -GCCGCCGaCGCG-------------GUGC-CAGC-------------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 18574 0.67 0.256013
Target:  5'- cCGGUGGCgucccgGCCACuGcUGGCGCGCc -3'
miRNA:   3'- -GCCGCCGacg---CGGUGcCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 18632 0.77 0.049358
Target:  5'- aGGUGGCaacccggGCGCCGCuGG-CGGUACGCu -3'
miRNA:   3'- gCCGCCGa------CGCGGUG-CCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 19088 0.68 0.220649
Target:  5'- aCGGCGucGCggUGCGCaacgcacugcCGGUCGGC-CGCg -3'
miRNA:   3'- -GCCGC--CG--ACGCGgu--------GCCAGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 19394 0.7 0.170994
Target:  5'- uCGGCGGC-GCGCagUACGGcaacGCGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCG--GUGCCagc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 20126 0.67 0.275374
Target:  5'- gGGUuacGGCaaGCGCgACGGUaCGGCcguCGCg -3'
miRNA:   3'- gCCG---CCGa-CGCGgUGCCA-GCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 20690 0.77 0.050606
Target:  5'- uCGGCGGCgcgaaaccUGCGCCGgucgugacgcagcCGGUCaGCGCGCc -3'
miRNA:   3'- -GCCGCCG--------ACGCGGU-------------GCCAGcCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.