miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 20760 0.74 0.07799
Target:  5'- uGGCGGCcuguaacauggccGCGCCGCugaucGUCGGCGCGUc -3'
miRNA:   3'- gCCGCCGa------------CGCGGUGc----CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 20876 0.68 0.23195
Target:  5'- aCGGC-GCUGCGCCAgUGGcaggaGGCGCa- -3'
miRNA:   3'- -GCCGcCGACGCGGU-GCCag---CCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 21082 0.66 0.288922
Target:  5'- aGGCGGCca------GGUCGGCACGCc -3'
miRNA:   3'- gCCGCCGacgcggugCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 21104 0.77 0.050606
Target:  5'- gGGCGGCgacgagcccgGCGCaGCGGgugcugcUCGGCGCGCa -3'
miRNA:   3'- gCCGCCGa---------CGCGgUGCC-------AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 21164 0.82 0.018514
Target:  5'- cCGGCGGCUaCGCCACGGggccggacgCGGaCGCGCg -3'
miRNA:   3'- -GCCGCCGAcGCGGUGCCa--------GCC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 22385 0.66 0.318316
Target:  5'- aCGGCGcGCaGCGCCAggaaagaggcgcccaGGUUGGCGacCGUc -3'
miRNA:   3'- -GCCGC-CGaCGCGGUg--------------CCAGCCGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 22495 0.73 0.092832
Target:  5'- cCGGCGGCgGCcgGCgGCGGuUCGGCGgcUGCg -3'
miRNA:   3'- -GCCGCCGaCG--CGgUGCC-AGCCGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 22541 0.67 0.282084
Target:  5'- gGGCGGCgcgGaCGCCGacGUCGcGCuCGCg -3'
miRNA:   3'- gCCGCCGa--C-GCGGUgcCAGC-CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 22828 0.69 0.189535
Target:  5'- -cGCuGUcGCGCgCGCGGaUCGGCAUGCa -3'
miRNA:   3'- gcCGcCGaCGCG-GUGCC-AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 23379 0.68 0.230224
Target:  5'- cCGGUGaucgucguauugccGcCUGCGCCGCccGGcacguUCGGCGCGCc -3'
miRNA:   3'- -GCCGC--------------C-GACGCGGUG--CC-----AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 23866 0.68 0.208763
Target:  5'- uGGCGGCguacCGCCGCaaGGcgaagauuucaaCGGCGCGCu -3'
miRNA:   3'- gCCGCCGac--GCGGUG--CCa-----------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 23990 0.67 0.249811
Target:  5'- uCGGCGGCUacccgaaagGCGCCGCGcugcaaaguGcCGaCGCGCu -3'
miRNA:   3'- -GCCGCCGA---------CGCGGUGC---------CaGCcGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 24101 0.67 0.256013
Target:  5'- gCGGCGGCUacGUGCCgggcuaucaguACGGcaccaCGGCACu- -3'
miRNA:   3'- -GCCGCCGA--CGCGG-----------UGCCa----GCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 24560 1.09 0.000144
Target:  5'- gCGGCGGCUGCGCCACGGUCGGCACGCc -3'
miRNA:   3'- -GCCGCCGACGCGGUGCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 24698 0.74 0.083042
Target:  5'- aCGGCGGC-GCGCCGaacgugcCGGgCGGCGCagGCg -3'
miRNA:   3'- -GCCGCCGaCGCGGU-------GCCaGCCGUG--CG- -5'
24170 5' -63.4 NC_005263.2 + 24791 0.8 0.026694
Target:  5'- uCGGCGGCU-CGCCGgGcGUCGGCgGCGCg -3'
miRNA:   3'- -GCCGCCGAcGCGGUgC-CAGCCG-UGCG- -5'
24170 5' -63.4 NC_005263.2 + 24845 0.73 0.100679
Target:  5'- aCGGCGGUgccggUGCGCCAgcCGG-CGGCuACGg -3'
miRNA:   3'- -GCCGCCG-----ACGCGGU--GCCaGCCG-UGCg -5'
24170 5' -63.4 NC_005263.2 + 24938 0.7 0.162344
Target:  5'- uCGGUGGCgGCGg-ACGG-CGGUGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCggUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 25024 0.73 0.106253
Target:  5'- gCGGUGGCUGCgGUgGCGuGUacgCGGCAgGCa -3'
miRNA:   3'- -GCCGCCGACG-CGgUGC-CA---GCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 26201 0.73 0.095381
Target:  5'- gCGGCGGCcGCGCgauGCGG-CGGCcguuCGCg -3'
miRNA:   3'- -GCCGCCGaCGCGg--UGCCaGCCGu---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.