Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 26519 | 0.7 | 0.166619 |
Target: 5'- gCGcGCGGCgucGaCGCCgGCGG-CGaGCACGCg -3' miRNA: 3'- -GC-CGCCGa--C-GCGG-UGCCaGC-CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27372 | 0.76 | 0.063308 |
Target: 5'- gCGaGCGGC-GCgGCgGCGGcCGGCGCGCu -3' miRNA: 3'- -GC-CGCCGaCG-CGgUGCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27403 | 0.68 | 0.23195 |
Target: 5'- --cCGGCUGCGUCACGacCGGCGCa- -3' miRNA: 3'- gccGCCGACGCGGUGCcaGCCGUGcg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27726 | 0.67 | 0.26234 |
Target: 5'- uGGCGaGUUGU---ACGGugUCGGCGCGCg -3' miRNA: 3'- gCCGC-CGACGcggUGCC--AGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27919 | 0.76 | 0.055144 |
Target: 5'- aCGGCGGC-GCGUCGCc--CGGCGCGCu -3' miRNA: 3'- -GCCGCCGaCGCGGUGccaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 28222 | 0.67 | 0.256013 |
Target: 5'- uGGUGGcCUGCaucgGCCGCGcUCGcCGCGCu -3' miRNA: 3'- gCCGCC-GACG----CGGUGCcAGCcGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 28791 | 0.66 | 0.328095 |
Target: 5'- uGGUugccuugcgcauccgGGC-GCGUCACGGUgaccgugaCGcGCACGCg -3' miRNA: 3'- gCCG---------------CCGaCGCGGUGCCA--------GC-CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29057 | 0.74 | 0.078847 |
Target: 5'- cCGcGCGGC-GCGuCCuCGGggCGGCGCGCa -3' miRNA: 3'- -GC-CGCCGaCGC-GGuGCCa-GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29150 | 0.68 | 0.20982 |
Target: 5'- uCGuGcCGGCUGCGCU-CGuaacCGGCGCGCu -3' miRNA: 3'- -GC-C-GCCGACGCGGuGCca--GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29234 | 0.7 | 0.150108 |
Target: 5'- uCGGCGcGCaGCGgCGCGccgaGGCACGCg -3' miRNA: 3'- -GCCGC-CGaCGCgGUGCcag-CCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29282 | 0.72 | 0.112116 |
Target: 5'- gCGGCaaugaGCUGCacggcgGCCG-GGUCGGCAUGCg -3' miRNA: 3'- -GCCGc----CGACG------CGGUgCCAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29508 | 0.67 | 0.256013 |
Target: 5'- -cGCcGCUGCGgCGuCcGUCGGCGCGCc -3' miRNA: 3'- gcCGcCGACGCgGU-GcCAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 29614 | 0.67 | 0.249811 |
Target: 5'- aGGC-GUUGCGCUuCGGaCGGUACGa -3' miRNA: 3'- gCCGcCGACGCGGuGCCaGCCGUGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 30268 | 0.69 | 0.189535 |
Target: 5'- uCGGCGaagcGCUGCGCaauCGGgccGCGCGCg -3' miRNA: 3'- -GCCGC----CGACGCGgu-GCCagcCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 30460 | 0.71 | 0.146219 |
Target: 5'- gCGGCGGCcuucgcguUGCGCCACaucCGGCGCccugGCg -3' miRNA: 3'- -GCCGCCG--------ACGCGGUGccaGCCGUG----CG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 30655 | 0.7 | 0.166619 |
Target: 5'- aGGCGGCUGuCGUCgaguuucgACGG-CGaGCugGCc -3' miRNA: 3'- gCCGCCGAC-GCGG--------UGCCaGC-CGugCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 30935 | 0.67 | 0.256013 |
Target: 5'- aCGcGCGaGCUGCGCauuCGGcuucUCGGC-CGUg -3' miRNA: 3'- -GC-CGC-CGACGCGgu-GCC----AGCCGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 31254 | 0.7 | 0.154091 |
Target: 5'- cCGcGCGGCgcgGCGCCGggcaGGUCGaagugcugucGCACGUa -3' miRNA: 3'- -GC-CGCCGa--CGCGGUg---CCAGC----------CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 31383 | 0.66 | 0.325062 |
Target: 5'- -uGCgGGCUGCuCgCGCGGUaGGUGCGCu -3' miRNA: 3'- gcCG-CCGACGcG-GUGCCAgCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 31552 | 0.7 | 0.162344 |
Target: 5'- uGGCGucGCUGC-CCA-GG-CGGCGCGCc -3' miRNA: 3'- gCCGC--CGACGcGGUgCCaGCCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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