Results 101 - 120 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 32021 | 0.74 | 0.087927 |
Target: 5'- gGGCGGCgaGCGCaaauggaacgauCGCGG-CGGCACGg -3' miRNA: 3'- gCCGCCGa-CGCG------------GUGCCaGCCGUGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 32676 | 0.75 | 0.07465 |
Target: 5'- uCGGCGGCgaugucgacgUGCGUCAgcaGGUCGGUcacgaGCGCa -3' miRNA: 3'- -GCCGCCG----------ACGCGGUg--CCAGCCG-----UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 32886 | 0.67 | 0.249811 |
Target: 5'- gGGCGGCgaguuucgugGCGUCGgcguCGG-CGGCcCGCu -3' miRNA: 3'- gCCGCCGa---------CGCGGU----GCCaGCCGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 33432 | 0.66 | 0.288922 |
Target: 5'- -cGCGcGC-GCGUaGCGGUCGGCcacgaGCGCu -3' miRNA: 3'- gcCGC-CGaCGCGgUGCCAGCCG-----UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 33999 | 0.7 | 0.170994 |
Target: 5'- cCGGCcguguuGGCUGCGUCGCGG-C-GCGCGa -3' miRNA: 3'- -GCCG------CCGACGCGGUGCCaGcCGUGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 34376 | 0.66 | 0.317573 |
Target: 5'- cCGGCGGUaaCGCCGCGagcacGUCGG-ACGg -3' miRNA: 3'- -GCCGCCGacGCGGUGC-----CAGCCgUGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 35522 | 0.78 | 0.038419 |
Target: 5'- uGGCGcGCcgacUGCGCC-CGG-CGGCGCGCg -3' miRNA: 3'- gCCGC-CG----ACGCGGuGCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 35551 | 0.67 | 0.249811 |
Target: 5'- gGGCGG--GCGCUACGGcgccgcCGGC-CGCc -3' miRNA: 3'- gCCGCCgaCGCGGUGCCa-----GCCGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 36501 | 0.72 | 0.118281 |
Target: 5'- aGGCGaaguGCUGCGCCACuucaucgCGGgGCGCg -3' miRNA: 3'- gCCGC----CGACGCGGUGcca----GCCgUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 36935 | 0.67 | 0.268793 |
Target: 5'- cCGGaCGGCacGCGCUAUGcUCGGacaaaACGCa -3' miRNA: 3'- -GCC-GCCGa-CGCGGUGCcAGCCg----UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 37419 | 0.66 | 0.317573 |
Target: 5'- uCGcGCGGCcguccucGuCGUCAUacGUCGGCGCGCg -3' miRNA: 3'- -GC-CGCCGa------C-GCGGUGc-CAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 37926 | 0.69 | 0.194439 |
Target: 5'- gGGCgcaGGC-GCGCCGcCGGcagcCGGUGCGCa -3' miRNA: 3'- gCCG---CCGaCGCGGU-GCCa---GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 37992 | 0.66 | 0.295889 |
Target: 5'- uGGCGGCaacgaacuCGCCACGaUUGGUGcCGCa -3' miRNA: 3'- gCCGCCGac------GCGGUGCcAGCCGU-GCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 38093 | 0.74 | 0.078847 |
Target: 5'- gCGGCGGUgcUGCGCC-CGcaccUGGCGCGCa -3' miRNA: 3'- -GCCGCCG--ACGCGGuGCca--GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 38320 | 0.68 | 0.220649 |
Target: 5'- -cGCGGCgagGCGCCcccguucgguGCGauggaugcgaaGUCGGUGCGCa -3' miRNA: 3'- gcCGCCGa--CGCGG----------UGC-----------CAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 38387 | 0.68 | 0.226239 |
Target: 5'- uGGCGaacgagcgcaaGC-GCGCCgcaGCGGUCGaGCAgGCa -3' miRNA: 3'- gCCGC-----------CGaCGCGG---UGCCAGC-CGUgCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 38500 | 0.66 | 0.298713 |
Target: 5'- uGGCGcgacgcgaugaucgcGCUGcCGCaAUGGgaCGGCACGCa -3' miRNA: 3'- gCCGC---------------CGAC-GCGgUGCCa-GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 38578 | 0.66 | 0.291693 |
Target: 5'- uCGGUcGCUGcCGCgCACGGcCGcacgauucagcccgcGCACGCg -3' miRNA: 3'- -GCCGcCGAC-GCG-GUGCCaGC---------------CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 38851 | 0.8 | 0.029866 |
Target: 5'- gCGGacuCGaGCgGCGUCACGGUCGGCACGUu -3' miRNA: 3'- -GCC---GC-CGaCGCGGUGCCAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 39100 | 0.68 | 0.215176 |
Target: 5'- aCGGCGaGUacgcgcgacucgUGCGCCGUGcGUCGGCGCu- -3' miRNA: 3'- -GCCGC-CG------------ACGCGGUGC-CAGCCGUGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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