miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 47737 0.66 0.316091
Target:  5'- uGGCGGUUGcCGCCuguucgcgaaaGGcaUCuGGCugGCg -3'
miRNA:   3'- gCCGCCGAC-GCGGug---------CC--AG-CCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 47681 0.68 0.215176
Target:  5'- gCGGCGauccucguGCUGUGCgGCaagcugcUCGGCACGCu -3'
miRNA:   3'- -GCCGC--------CGACGCGgUGcc-----AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 47304 0.76 0.061587
Target:  5'- uCGGUc-CUGCGCCgGCGGcCGGCACGCu -3'
miRNA:   3'- -GCCGccGACGCGG-UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 47215 0.72 0.116399
Target:  5'- cCGGCGGCgacCGCCGCgcugaacgaagcgccGGcCGGCACGa -3'
miRNA:   3'- -GCCGCCGac-GCGGUG---------------CCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 46844 0.68 0.220649
Target:  5'- aGGCGGC-GCGCCAaGGa--GCACGUc -3'
miRNA:   3'- gCCGCCGaCGCGGUgCCagcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 46173 0.69 0.180053
Target:  5'- gGGCGGCgaGUGUC-CGGUaccagCGGaCACGCu -3'
miRNA:   3'- gCCGCCGa-CGCGGuGCCA-----GCC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 46162 0.71 0.142422
Target:  5'- gCGGuuGCcgGCGUCGcCGGUgcCGGCGCGCu -3'
miRNA:   3'- -GCCgcCGa-CGCGGU-GCCA--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 45856 0.66 0.325062
Target:  5'- gCGcGCGGC-GCGCUACGGcaaguUCGaggauCACGCc -3'
miRNA:   3'- -GC-CGCCGaCGCGGUGCC-----AGCc----GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 45842 0.69 0.189535
Target:  5'- aCGGCGaacgcGCUGCGCucgaacaacuaCACGuacaUCGGCGCGUa -3'
miRNA:   3'- -GCCGC-----CGACGCG-----------GUGCc---AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 45470 0.67 0.256013
Target:  5'- aCGcCGGCaaGCGCgaugaaccgCGCGGUCGGCcugucGCGCa -3'
miRNA:   3'- -GCcGCCGa-CGCG---------GUGCCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 45170 0.66 0.317573
Target:  5'- gCGGCGGCgaugGCGCauucgcgagCAUGG-CGGCcaacuaugGCGUc -3'
miRNA:   3'- -GCCGCCGa---CGCG---------GUGCCaGCCG--------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 44770 0.67 0.249811
Target:  5'- -cGCGcGCgGCGCC--GG-CGGCGCGCa -3'
miRNA:   3'- gcCGC-CGaCGCGGugCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44687 0.7 0.158169
Target:  5'- uCGGCGGCcauccUGCGCgCACacGUCGGCG-GCc -3'
miRNA:   3'- -GCCGCCG-----ACGCG-GUGc-CAGCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 44638 0.68 0.20982
Target:  5'- gCGGCagcugaucGaGCUGCGCCucgAUGcGUCGcGCGCGCc -3'
miRNA:   3'- -GCCG--------C-CGACGCGG---UGC-CAGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44112 0.69 0.189535
Target:  5'- uCGGUcaGG-UGCGCUgcuCGG-CGGCGCGCg -3'
miRNA:   3'- -GCCG--CCgACGCGGu--GCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 44031 0.67 0.282084
Target:  5'- gGGUGGCgacuuCGCCGCGuuccguggCGGCugGUg -3'
miRNA:   3'- gCCGCCGac---GCGGUGCca------GCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 43244 0.78 0.038419
Target:  5'- gCGGCGGCaGCGgCAuCGGcaCGGCGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCgGU-GCCa-GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 43086 0.67 0.256013
Target:  5'- gGGcCGGCUgucgaGCGCgGCGGaaGGCAcCGUg -3'
miRNA:   3'- gCC-GCCGA-----CGCGgUGCCagCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 42022 0.78 0.041772
Target:  5'- gCGGcCGGCcGCGCCAaggcuuccuGUCGGCGCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgc-------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 41752 0.67 0.256013
Target:  5'- gGGCGGCacgGCGCgAUcaacgaGGagaUCGGCGCGg -3'
miRNA:   3'- gCCGCCGa--CGCGgUG------CC---AGCCGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.