miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 41549 0.72 0.12476
Target:  5'- aCGcGCGGC-GCGCCGUGG-CGGCgAUGCg -3'
miRNA:   3'- -GC-CGCCGaCGCGGUGCCaGCCG-UGCG- -5'
24170 5' -63.4 NC_005263.2 + 41068 0.77 0.049358
Target:  5'- uGGCGcGaUGCGCCAUccGUCGGCGCGCg -3'
miRNA:   3'- gCCGC-CgACGCGGUGc-CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 40286 0.66 0.325062
Target:  5'- -cGCGGUUGCGCagAUGcUCGGCguauaACGCg -3'
miRNA:   3'- gcCGCCGACGCGg-UGCcAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 40058 0.67 0.249811
Target:  5'- aCGGaacuCGcGCgGCGCCACGGcgCGG-ACGCc -3'
miRNA:   3'- -GCC----GC-CGaCGCGGUGCCa-GCCgUGCG- -5'
24170 5' -63.4 NC_005263.2 + 39713 0.75 0.072633
Target:  5'- aGGCGGC-GCGCUuccUGGUCGGCcugccuGCGCc -3'
miRNA:   3'- gCCGCCGaCGCGGu--GCCAGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 39344 0.7 0.158169
Target:  5'- cCGG-GGCUGgcaGCCgauucgcucgGCGG-CGGCGCGCu -3'
miRNA:   3'- -GCCgCCGACg--CGG----------UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 39100 0.68 0.215176
Target:  5'- aCGGCGaGUacgcgcgacucgUGCGCCGUGcGUCGGCGCu- -3'
miRNA:   3'- -GCCGC-CG------------ACGCGGUGC-CAGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 38851 0.8 0.029866
Target:  5'- gCGGacuCGaGCgGCGUCACGGUCGGCACGUu -3'
miRNA:   3'- -GCC---GC-CGaCGCGGUGCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 38578 0.66 0.291693
Target:  5'- uCGGUcGCUGcCGCgCACGGcCGcacgauucagcccgcGCACGCg -3'
miRNA:   3'- -GCCGcCGAC-GCG-GUGCCaGC---------------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 38500 0.66 0.298713
Target:  5'- uGGCGcgacgcgaugaucgcGCUGcCGCaAUGGgaCGGCACGCa -3'
miRNA:   3'- gCCGC---------------CGAC-GCGgUGCCa-GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 38387 0.68 0.226239
Target:  5'- uGGCGaacgagcgcaaGC-GCGCCgcaGCGGUCGaGCAgGCa -3'
miRNA:   3'- gCCGC-----------CGaCGCGG---UGCCAGC-CGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 38320 0.68 0.220649
Target:  5'- -cGCGGCgagGCGCCcccguucgguGCGauggaugcgaaGUCGGUGCGCa -3'
miRNA:   3'- gcCGCCGa--CGCGG----------UGC-----------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 38093 0.74 0.078847
Target:  5'- gCGGCGGUgcUGCGCC-CGcaccUGGCGCGCa -3'
miRNA:   3'- -GCCGCCG--ACGCGGuGCca--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 37992 0.66 0.295889
Target:  5'- uGGCGGCaacgaacuCGCCACGaUUGGUGcCGCa -3'
miRNA:   3'- gCCGCCGac------GCGGUGCcAGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 37926 0.69 0.194439
Target:  5'- gGGCgcaGGC-GCGCCGcCGGcagcCGGUGCGCa -3'
miRNA:   3'- gCCG---CCGaCGCGGU-GCCa---GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 37419 0.66 0.317573
Target:  5'- uCGcGCGGCcguccucGuCGUCAUacGUCGGCGCGCg -3'
miRNA:   3'- -GC-CGCCGa------C-GCGGUGc-CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 36935 0.67 0.268793
Target:  5'- cCGGaCGGCacGCGCUAUGcUCGGacaaaACGCa -3'
miRNA:   3'- -GCC-GCCGa-CGCGGUGCcAGCCg----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 36501 0.72 0.118281
Target:  5'- aGGCGaaguGCUGCGCCACuucaucgCGGgGCGCg -3'
miRNA:   3'- gCCGC----CGACGCGGUGcca----GCCgUGCG- -5'
24170 5' -63.4 NC_005263.2 + 35551 0.67 0.249811
Target:  5'- gGGCGG--GCGCUACGGcgccgcCGGC-CGCc -3'
miRNA:   3'- gCCGCCgaCGCGGUGCCa-----GCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 35522 0.78 0.038419
Target:  5'- uGGCGcGCcgacUGCGCC-CGG-CGGCGCGCg -3'
miRNA:   3'- gCCGC-CG----ACGCGGuGCCaGCCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.