miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 34376 0.66 0.317573
Target:  5'- cCGGCGGUaaCGCCGCGagcacGUCGG-ACGg -3'
miRNA:   3'- -GCCGCCGacGCGGUGC-----CAGCCgUGCg -5'
24170 5' -63.4 NC_005263.2 + 33999 0.7 0.170994
Target:  5'- cCGGCcguguuGGCUGCGUCGCGG-C-GCGCGa -3'
miRNA:   3'- -GCCG------CCGACGCGGUGCCaGcCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 33432 0.66 0.288922
Target:  5'- -cGCGcGC-GCGUaGCGGUCGGCcacgaGCGCu -3'
miRNA:   3'- gcCGC-CGaCGCGgUGCCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 32886 0.67 0.249811
Target:  5'- gGGCGGCgaguuucgugGCGUCGgcguCGG-CGGCcCGCu -3'
miRNA:   3'- gCCGCCGa---------CGCGGU----GCCaGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 32676 0.75 0.07465
Target:  5'- uCGGCGGCgaugucgacgUGCGUCAgcaGGUCGGUcacgaGCGCa -3'
miRNA:   3'- -GCCGCCG----------ACGCGGUg--CCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 32021 0.74 0.087927
Target:  5'- gGGCGGCgaGCGCaaauggaacgauCGCGG-CGGCACGg -3'
miRNA:   3'- gCCGCCGa-CGCG------------GUGCCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 31552 0.7 0.162344
Target:  5'- uGGCGucGCUGC-CCA-GG-CGGCGCGCc -3'
miRNA:   3'- gCCGC--CGACGcGGUgCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 31383 0.66 0.325062
Target:  5'- -uGCgGGCUGCuCgCGCGGUaGGUGCGCu -3'
miRNA:   3'- gcCG-CCGACGcG-GUGCCAgCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 31254 0.7 0.154091
Target:  5'- cCGcGCGGCgcgGCGCCGggcaGGUCGaagugcugucGCACGUa -3'
miRNA:   3'- -GC-CGCCGa--CGCGGUg---CCAGC----------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 30935 0.67 0.256013
Target:  5'- aCGcGCGaGCUGCGCauuCGGcuucUCGGC-CGUg -3'
miRNA:   3'- -GC-CGC-CGACGCGgu-GCC----AGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 30655 0.7 0.166619
Target:  5'- aGGCGGCUGuCGUCgaguuucgACGG-CGaGCugGCc -3'
miRNA:   3'- gCCGCCGAC-GCGG--------UGCCaGC-CGugCG- -5'
24170 5' -63.4 NC_005263.2 + 30460 0.71 0.146219
Target:  5'- gCGGCGGCcuucgcguUGCGCCACaucCGGCGCccugGCg -3'
miRNA:   3'- -GCCGCCG--------ACGCGGUGccaGCCGUG----CG- -5'
24170 5' -63.4 NC_005263.2 + 30268 0.69 0.189535
Target:  5'- uCGGCGaagcGCUGCGCaauCGGgccGCGCGCg -3'
miRNA:   3'- -GCCGC----CGACGCGgu-GCCagcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29614 0.67 0.249811
Target:  5'- aGGC-GUUGCGCUuCGGaCGGUACGa -3'
miRNA:   3'- gCCGcCGACGCGGuGCCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 29508 0.67 0.256013
Target:  5'- -cGCcGCUGCGgCGuCcGUCGGCGCGCc -3'
miRNA:   3'- gcCGcCGACGCgGU-GcCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29282 0.72 0.112116
Target:  5'- gCGGCaaugaGCUGCacggcgGCCG-GGUCGGCAUGCg -3'
miRNA:   3'- -GCCGc----CGACG------CGGUgCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29234 0.7 0.150108
Target:  5'- uCGGCGcGCaGCGgCGCGccgaGGCACGCg -3'
miRNA:   3'- -GCCGC-CGaCGCgGUGCcag-CCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29150 0.68 0.20982
Target:  5'- uCGuGcCGGCUGCGCU-CGuaacCGGCGCGCu -3'
miRNA:   3'- -GC-C-GCCGACGCGGuGCca--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29057 0.74 0.078847
Target:  5'- cCGcGCGGC-GCGuCCuCGGggCGGCGCGCa -3'
miRNA:   3'- -GC-CGCCGaCGC-GGuGCCa-GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 28791 0.66 0.328095
Target:  5'- uGGUugccuugcgcauccgGGC-GCGUCACGGUgaccgugaCGcGCACGCg -3'
miRNA:   3'- gCCG---------------CCGaCGCGGUGCCA--------GC-CGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.