Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 28222 | 0.67 | 0.256013 |
Target: 5'- uGGUGGcCUGCaucgGCCGCGcUCGcCGCGCu -3' miRNA: 3'- gCCGCC-GACG----CGGUGCcAGCcGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27919 | 0.76 | 0.055144 |
Target: 5'- aCGGCGGC-GCGUCGCc--CGGCGCGCu -3' miRNA: 3'- -GCCGCCGaCGCGGUGccaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27726 | 0.67 | 0.26234 |
Target: 5'- uGGCGaGUUGU---ACGGugUCGGCGCGCg -3' miRNA: 3'- gCCGC-CGACGcggUGCC--AGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27403 | 0.68 | 0.23195 |
Target: 5'- --cCGGCUGCGUCACGacCGGCGCa- -3' miRNA: 3'- gccGCCGACGCGGUGCcaGCCGUGcg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 27372 | 0.76 | 0.063308 |
Target: 5'- gCGaGCGGC-GCgGCgGCGGcCGGCGCGCu -3' miRNA: 3'- -GC-CGCCGaCG-CGgUGCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 26519 | 0.7 | 0.166619 |
Target: 5'- gCGcGCGGCgucGaCGCCgGCGG-CGaGCACGCg -3' miRNA: 3'- -GC-CGCCGa--C-GCGG-UGCCaGC-CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 26201 | 0.73 | 0.095381 |
Target: 5'- gCGGCGGCcGCGCgauGCGG-CGGCcguuCGCg -3' miRNA: 3'- -GCCGCCGaCGCGg--UGCCaGCCGu---GCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 25024 | 0.73 | 0.106253 |
Target: 5'- gCGGUGGCUGCgGUgGCGuGUacgCGGCAgGCa -3' miRNA: 3'- -GCCGCCGACG-CGgUGC-CA---GCCGUgCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 24938 | 0.7 | 0.162344 |
Target: 5'- uCGGUGGCgGCGg-ACGG-CGGUGCGCg -3' miRNA: 3'- -GCCGCCGaCGCggUGCCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 24845 | 0.73 | 0.100679 |
Target: 5'- aCGGCGGUgccggUGCGCCAgcCGG-CGGCuACGg -3' miRNA: 3'- -GCCGCCG-----ACGCGGU--GCCaGCCG-UGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 24791 | 0.8 | 0.026694 |
Target: 5'- uCGGCGGCU-CGCCGgGcGUCGGCgGCGCg -3' miRNA: 3'- -GCCGCCGAcGCGGUgC-CAGCCG-UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 24698 | 0.74 | 0.083042 |
Target: 5'- aCGGCGGC-GCGCCGaacgugcCGGgCGGCGCagGCg -3' miRNA: 3'- -GCCGCCGaCGCGGU-------GCCaGCCGUG--CG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 24560 | 1.09 | 0.000144 |
Target: 5'- gCGGCGGCUGCGCCACGGUCGGCACGCc -3' miRNA: 3'- -GCCGCCGACGCGGUGCCAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 24101 | 0.67 | 0.256013 |
Target: 5'- gCGGCGGCUacGUGCCgggcuaucaguACGGcaccaCGGCACu- -3' miRNA: 3'- -GCCGCCGA--CGCGG-----------UGCCa----GCCGUGcg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 23990 | 0.67 | 0.249811 |
Target: 5'- uCGGCGGCUacccgaaagGCGCCGCGcugcaaaguGcCGaCGCGCu -3' miRNA: 3'- -GCCGCCGA---------CGCGGUGC---------CaGCcGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 23866 | 0.68 | 0.208763 |
Target: 5'- uGGCGGCguacCGCCGCaaGGcgaagauuucaaCGGCGCGCu -3' miRNA: 3'- gCCGCCGac--GCGGUG--CCa-----------GCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 23379 | 0.68 | 0.230224 |
Target: 5'- cCGGUGaucgucguauugccGcCUGCGCCGCccGGcacguUCGGCGCGCc -3' miRNA: 3'- -GCCGC--------------C-GACGCGGUG--CC-----AGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 22828 | 0.69 | 0.189535 |
Target: 5'- -cGCuGUcGCGCgCGCGGaUCGGCAUGCa -3' miRNA: 3'- gcCGcCGaCGCG-GUGCC-AGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 22541 | 0.67 | 0.282084 |
Target: 5'- gGGCGGCgcgGaCGCCGacGUCGcGCuCGCg -3' miRNA: 3'- gCCGCCGa--C-GCGGUgcCAGC-CGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 22495 | 0.73 | 0.092832 |
Target: 5'- cCGGCGGCgGCcgGCgGCGGuUCGGCGgcUGCg -3' miRNA: 3'- -GCCGCCGaCG--CGgUGCC-AGCCGU--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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