Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24170 | 5' | -63.4 | NC_005263.2 | + | 22385 | 0.66 | 0.318316 |
Target: 5'- aCGGCGcGCaGCGCCAggaaagaggcgcccaGGUUGGCGacCGUc -3' miRNA: 3'- -GCCGC-CGaCGCGGUg--------------CCAGCCGU--GCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 21164 | 0.82 | 0.018514 |
Target: 5'- cCGGCGGCUaCGCCACGGggccggacgCGGaCGCGCg -3' miRNA: 3'- -GCCGCCGAcGCGGUGCCa--------GCC-GUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 21104 | 0.77 | 0.050606 |
Target: 5'- gGGCGGCgacgagcccgGCGCaGCGGgugcugcUCGGCGCGCa -3' miRNA: 3'- gCCGCCGa---------CGCGgUGCC-------AGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 21082 | 0.66 | 0.288922 |
Target: 5'- aGGCGGCca------GGUCGGCACGCc -3' miRNA: 3'- gCCGCCGacgcggugCCAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 20876 | 0.68 | 0.23195 |
Target: 5'- aCGGC-GCUGCGCCAgUGGcaggaGGCGCa- -3' miRNA: 3'- -GCCGcCGACGCGGU-GCCag---CCGUGcg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 20760 | 0.74 | 0.07799 |
Target: 5'- uGGCGGCcuguaacauggccGCGCCGCugaucGUCGGCGCGUc -3' miRNA: 3'- gCCGCCGa------------CGCGGUGc----CAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 20690 | 0.77 | 0.050606 |
Target: 5'- uCGGCGGCgcgaaaccUGCGCCGgucgugacgcagcCGGUCaGCGCGCc -3' miRNA: 3'- -GCCGCCG--------ACGCGGU-------------GCCAGcCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 20126 | 0.67 | 0.275374 |
Target: 5'- gGGUuacGGCaaGCGCgACGGUaCGGCcguCGCg -3' miRNA: 3'- gCCG---CCGa-CGCGgUGCCA-GCCGu--GCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 19394 | 0.7 | 0.170994 |
Target: 5'- uCGGCGGC-GCGCagUACGGcaacGCGCGCg -3' miRNA: 3'- -GCCGCCGaCGCG--GUGCCagc-CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 19088 | 0.68 | 0.220649 |
Target: 5'- aCGGCGucGCggUGCGCaacgcacugcCGGUCGGC-CGCg -3' miRNA: 3'- -GCCGC--CG--ACGCGgu--------GCCAGCCGuGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 18632 | 0.77 | 0.049358 |
Target: 5'- aGGUGGCaacccggGCGCCGCuGG-CGGUACGCu -3' miRNA: 3'- gCCGCCGa------CGCGGUG-CCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 18574 | 0.67 | 0.256013 |
Target: 5'- cCGGUGGCgucccgGCCACuGcUGGCGCGCc -3' miRNA: 3'- -GCCGCCGacg---CGGUGcCaGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 18164 | 0.68 | 0.236605 |
Target: 5'- uCGGCGGCgGCGUuggcggcaucgucUACGuGUCGaaccguagugaauGCGCGCa -3' miRNA: 3'- -GCCGCCGaCGCG-------------GUGC-CAGC-------------CGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17815 | 0.67 | 0.249811 |
Target: 5'- aGGCGGCcgagGaUGCCGCGcG-CGGCccgauuGCGCa -3' miRNA: 3'- gCCGCCGa---C-GCGGUGC-CaGCCG------UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17755 | 0.84 | 0.014359 |
Target: 5'- cCGGCGGCaGCgcgGCCGCGcUCGGCACGCg -3' miRNA: 3'- -GCCGCCGaCG---CGGUGCcAGCCGUGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17590 | 0.67 | 0.256013 |
Target: 5'- gCGGCGGCcaagGCGCgCAgGGcaucuuccagUGGCGCGg -3' miRNA: 3'- -GCCGCCGa---CGCG-GUgCCa---------GCCGUGCg -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17521 | 0.66 | 0.288922 |
Target: 5'- aGGCGGCgGCuaUCACGGcaaaCGGUguGCGCg -3' miRNA: 3'- gCCGCCGaCGc-GGUGCCa---GCCG--UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17397 | 0.67 | 0.249811 |
Target: 5'- gGcGCGGCcgcGCGCCugGCGGgCGGUGuCGCa -3' miRNA: 3'- gC-CGCCGa--CGCGG--UGCCaGCCGU-GCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17295 | 0.66 | 0.288922 |
Target: 5'- uGGCgcgaGGCaGuCGCCACGGcgcgcgaauUCGGCccgGCGCc -3' miRNA: 3'- gCCG----CCGaC-GCGGUGCC---------AGCCG---UGCG- -5' |
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24170 | 5' | -63.4 | NC_005263.2 | + | 17150 | 0.7 | 0.154091 |
Target: 5'- -aGCGGUcGaCGUCGCGGuguUCGGCugGCa -3' miRNA: 3'- gcCGCCGaC-GCGGUGCC---AGCCGugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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