miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 21164 0.82 0.018514
Target:  5'- cCGGCGGCUaCGCCACGGggccggacgCGGaCGCGCg -3'
miRNA:   3'- -GCCGCCGAcGCGGUGCCa--------GCC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29282 0.72 0.112116
Target:  5'- gCGGCaaugaGCUGCacggcgGCCG-GGUCGGCAUGCg -3'
miRNA:   3'- -GCCGc----CGACG------CGGUgCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12100 0.71 0.138716
Target:  5'- gCGGCcuGGCaUGCGCaGCGG-CGcGCGCGCc -3'
miRNA:   3'- -GCCG--CCG-ACGCGgUGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 28791 0.66 0.328095
Target:  5'- uGGUugccuugcgcauccgGGC-GCGUCACGGUgaccgugaCGcGCACGCg -3'
miRNA:   3'- gCCG---------------CCGaCGCGGUGCCA--------GC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 18632 0.77 0.049358
Target:  5'- aGGUGGCaacccggGCGCCGCuGG-CGGUACGCu -3'
miRNA:   3'- gCCGCCGa------CGCGGUG-CCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 20690 0.77 0.050606
Target:  5'- uCGGCGGCgcgaaaccUGCGCCGgucgugacgcagcCGGUCaGCGCGCc -3'
miRNA:   3'- -GCCGCCG--------ACGCGGU-------------GCCAGcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 14440 0.76 0.059746
Target:  5'- aCGGCGuGCgcgcGCGCCucuuucgagccgaGCGG-CGGCACGCc -3'
miRNA:   3'- -GCCGC-CGa---CGCGG-------------UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12557 0.76 0.062787
Target:  5'- cCGGCGGCgccguaGCGCCcgcccGCGcgccgccgggcgcaGUCGGCGCGCc -3'
miRNA:   3'- -GCCGCCGa-----CGCGG-----UGC--------------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 32676 0.75 0.07465
Target:  5'- uCGGCGGCgaugucgacgUGCGUCAgcaGGUCGGUcacgaGCGCa -3'
miRNA:   3'- -GCCGCCG----------ACGCGGUg--CCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 1641 0.73 0.106253
Target:  5'- uCGGCGGCguagcccuggaUGCGCUgcGCGGUCGGaaauaAgGCu -3'
miRNA:   3'- -GCCGCCG-----------ACGCGG--UGCCAGCCg----UgCG- -5'
24170 5' -63.4 NC_005263.2 + 29057 0.74 0.078847
Target:  5'- cCGcGCGGC-GCGuCCuCGGggCGGCGCGCa -3'
miRNA:   3'- -GC-CGCCGaCGC-GGuGCCa-GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 39713 0.75 0.072633
Target:  5'- aGGCGGC-GCGCUuccUGGUCGGCcugccuGCGCc -3'
miRNA:   3'- gCCGCCGaCGCGGu--GCCAGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 2289 0.79 0.032485
Target:  5'- uCGGCaGGUcgUGCGCCGUGGcCGGCACGCc -3'
miRNA:   3'- -GCCG-CCG--ACGCGGUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 10163 0.73 0.092832
Target:  5'- uCGGcCGGUUGCGCaC-CGGcugccggCGGCGCGCc -3'
miRNA:   3'- -GCC-GCCGACGCG-GuGCCa------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 42022 0.78 0.041772
Target:  5'- gCGGcCGGCcGCGCCAaggcuuccuGUCGGCGCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgc-------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 14093 0.75 0.066707
Target:  5'- uCGGCugguaccGGCUGCGCgGCGGUCGcCGuCGCg -3'
miRNA:   3'- -GCCG-------CCGACGCGgUGCCAGCcGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 22495 0.73 0.092832
Target:  5'- cCGGCGGCgGCcgGCgGCGGuUCGGCGgcUGCg -3'
miRNA:   3'- -GCCGCCGaCG--CGgUGCC-AGCCGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 47215 0.72 0.116399
Target:  5'- cCGGCGGCgacCGCCGCgcugaacgaagcgccGGcCGGCACGa -3'
miRNA:   3'- -GCCGCCGac-GCGGUG---------------CCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 6616 0.78 0.044164
Target:  5'- uCGGCGGC-GCGCUcggcGCGGUCGaGCAguCGCg -3'
miRNA:   3'- -GCCGCCGaCGCGG----UGCCAGC-CGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 21104 0.77 0.050606
Target:  5'- gGGCGGCgacgagcccgGCGCaGCGGgugcugcUCGGCGCGCa -3'
miRNA:   3'- gCCGCCGa---------CGCGgUGCC-------AGCCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.