miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 44687 0.7 0.158169
Target:  5'- uCGGCGGCcauccUGCGCgCACacGUCGGCG-GCc -3'
miRNA:   3'- -GCCGCCG-----ACGCG-GUGc-CAGCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 12100 0.71 0.138716
Target:  5'- gCGGCcuGGCaUGCGCaGCGG-CGcGCGCGCc -3'
miRNA:   3'- -GCCG--CCG-ACGCGgUGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 39713 0.75 0.072633
Target:  5'- aGGCGGC-GCGCUuccUGGUCGGCcugccuGCGCc -3'
miRNA:   3'- gCCGCCGaCGCGGu--GCCAGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 6616 0.78 0.044164
Target:  5'- uCGGCGGC-GCGCUcggcGCGGUCGaGCAguCGCg -3'
miRNA:   3'- -GCCGCCGaCGCGG----UGCCAGC-CGU--GCG- -5'
24170 5' -63.4 NC_005263.2 + 30268 0.69 0.189535
Target:  5'- uCGGCGaagcGCUGCGCaauCGGgccGCGCGCg -3'
miRNA:   3'- -GCCGC----CGACGCGgu-GCCagcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 33999 0.7 0.170994
Target:  5'- cCGGCcguguuGGCUGCGUCGCGG-C-GCGCGa -3'
miRNA:   3'- -GCCG------CCGACGCGGUGCCaGcCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 29282 0.72 0.112116
Target:  5'- gCGGCaaugaGCUGCacggcgGCCG-GGUCGGCAUGCg -3'
miRNA:   3'- -GCCGc----CGACG------CGGUgCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 42022 0.78 0.041772
Target:  5'- gCGGcCGGCcGCGCCAaggcuuccuGUCGGCGCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgc-------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 26519 0.7 0.166619
Target:  5'- gCGcGCGGCgucGaCGCCgGCGG-CGaGCACGCg -3'
miRNA:   3'- -GC-CGCCGa--C-GCGG-UGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 2289 0.79 0.032485
Target:  5'- uCGGCaGGUcgUGCGCCGUGGcCGGCACGCc -3'
miRNA:   3'- -GCCG-CCG--ACGCGGUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 47215 0.72 0.116399
Target:  5'- cCGGCGGCgacCGCCGCgcugaacgaagcgccGGcCGGCACGa -3'
miRNA:   3'- -GCCGCCGac-GCGGUG---------------CCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 31552 0.7 0.162344
Target:  5'- uGGCGucGCUGC-CCA-GG-CGGCGCGCc -3'
miRNA:   3'- gCCGC--CGACGcGGUgCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 10163 0.73 0.092832
Target:  5'- uCGGcCGGUUGCGCaC-CGGcugccggCGGCGCGCc -3'
miRNA:   3'- -GCC-GCCGACGCG-GuGCCa------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 32676 0.75 0.07465
Target:  5'- uCGGCGGCgaugucgacgUGCGUCAgcaGGUCGGUcacgaGCGCa -3'
miRNA:   3'- -GCCGCCG----------ACGCGGUg--CCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 14440 0.76 0.059746
Target:  5'- aCGGCGuGCgcgcGCGCCucuuucgagccgaGCGG-CGGCACGCc -3'
miRNA:   3'- -GCCGC-CGa---CGCGG-------------UGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 18632 0.77 0.049358
Target:  5'- aGGUGGCaacccggGCGCCGCuGG-CGGUACGCu -3'
miRNA:   3'- gCCGCCGa------CGCGGUG-CCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 39100 0.68 0.215176
Target:  5'- aCGGCGaGUacgcgcgacucgUGCGCCGUGcGUCGGCGCu- -3'
miRNA:   3'- -GCCGC-CG------------ACGCGGUGC-CAGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 29150 0.68 0.20982
Target:  5'- uCGuGcCGGCUGCGCU-CGuaacCGGCGCGCu -3'
miRNA:   3'- -GC-C-GCCGACGCGGuGCca--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 46173 0.69 0.180053
Target:  5'- gGGCGGCgaGUGUC-CGGUaccagCGGaCACGCu -3'
miRNA:   3'- gCCGCCGa-CGCGGuGCCA-----GCC-GUGCG- -5'
24170 5' -63.4 NC_005263.2 + 12667 0.7 0.175472
Target:  5'- uCGGcCGGC-GCGCCGgGGUCGucGUuCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgCCAGC--CGuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.