miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 14093 0.75 0.066707
Target:  5'- uCGGCugguaccGGCUGCGCgGCGGUCGcCGuCGCg -3'
miRNA:   3'- -GCCG-------CCGACGCGgUGCCAGCcGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 20760 0.74 0.07799
Target:  5'- uGGCGGCcuguaacauggccGCGCCGCugaucGUCGGCGCGUc -3'
miRNA:   3'- gCCGCCGa------------CGCGGUGc----CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 1641 0.73 0.106253
Target:  5'- uCGGCGGCguagcccuggaUGCGCUgcGCGGUCGGaaauaAgGCu -3'
miRNA:   3'- -GCCGCCG-----------ACGCGG--UGCCAGCCg----UgCG- -5'
24170 5' -63.4 NC_005263.2 + 12100 0.71 0.138716
Target:  5'- gCGGCcuGGCaUGCGCaGCGG-CGcGCGCGCc -3'
miRNA:   3'- -GCCG--CCG-ACGCGgUGCCaGC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 30655 0.7 0.166619
Target:  5'- aGGCGGCUGuCGUCgaguuucgACGG-CGaGCugGCc -3'
miRNA:   3'- gCCGCCGAC-GCGG--------UGCCaGC-CGugCG- -5'
24170 5' -63.4 NC_005263.2 + 36935 0.67 0.268793
Target:  5'- cCGGaCGGCacGCGCUAUGcUCGGacaaaACGCa -3'
miRNA:   3'- -GCC-GCCGa-CGCGGUGCcAGCCg----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 5043 0.67 0.255387
Target:  5'- cCGGCGGCcgacuauUG-GCCGacGUCGGCGuCGCg -3'
miRNA:   3'- -GCCGCCG-------ACgCGGUgcCAGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 3285 0.67 0.249811
Target:  5'- aGGCauacGCccuuucuccuUGUGCgCGCGG-CGGCGCGCg -3'
miRNA:   3'- gCCGc---CG----------ACGCG-GUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 19088 0.68 0.220649
Target:  5'- aCGGCGucGCggUGCGCaacgcacugcCGGUCGGC-CGCg -3'
miRNA:   3'- -GCCGC--CG--ACGCGgu--------GCCAGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 41549 0.72 0.12476
Target:  5'- aCGcGCGGC-GCGCCGUGG-CGGCgAUGCg -3'
miRNA:   3'- -GC-CGCCGaCGCGGUGCCaGCCG-UGCG- -5'
24170 5' -63.4 NC_005263.2 + 36501 0.72 0.118281
Target:  5'- aGGCGaaguGCUGCGCCACuucaucgCGGgGCGCg -3'
miRNA:   3'- gCCGC----CGACGCGGUGcca----GCCgUGCG- -5'
24170 5' -63.4 NC_005263.2 + 969 0.72 0.112116
Target:  5'- gCGGCGGUcgccUGCGCguCGGaCGGCGCu- -3'
miRNA:   3'- -GCCGCCG----ACGCGguGCCaGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 24845 0.73 0.100679
Target:  5'- aCGGCGGUgccggUGCGCCAgcCGG-CGGCuACGg -3'
miRNA:   3'- -GCCGCCG-----ACGCGGU--GCCaGCCG-UGCg -5'
24170 5' -63.4 NC_005263.2 + 7020 0.67 0.268793
Target:  5'- uGGCGGC-GCGaaACGuGUCGacgaucguGCGCGCc -3'
miRNA:   3'- gCCGCCGaCGCggUGC-CAGC--------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 1421 0.67 0.243734
Target:  5'- uCGGCgcgcgccgccuuGGCUGCGCgcgaggcuuCGCGGcgcucgCGGCGCuGCa -3'
miRNA:   3'- -GCCG------------CCGACGCG---------GUGCCa-----GCCGUG-CG- -5'
24170 5' -63.4 NC_005263.2 + 17815 0.67 0.249811
Target:  5'- aGGCGGCcgagGaUGCCGCGcG-CGGCccgauuGCGCa -3'
miRNA:   3'- gCCGCCGa---C-GCGGUGC-CaGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 16486 0.73 0.092832
Target:  5'- aCGGC-GCUGCGCCGCG--CGGCcguCGCg -3'
miRNA:   3'- -GCCGcCGACGCGGUGCcaGCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 32021 0.74 0.087927
Target:  5'- gGGCGGCgaGCGCaaauggaacgauCGCGG-CGGCACGg -3'
miRNA:   3'- gCCGCCGa-CGCG------------GUGCCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 25024 0.73 0.106253
Target:  5'- gCGGUGGCUGCgGUgGCGuGUacgCGGCAgGCa -3'
miRNA:   3'- -GCCGCCGACG-CGgUGC-CA---GCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 18164 0.68 0.236605
Target:  5'- uCGGCGGCgGCGUuggcggcaucgucUACGuGUCGaaccguagugaauGCGCGCa -3'
miRNA:   3'- -GCCGCCGaCGCG-------------GUGC-CAGC-------------CGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.