miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 20126 0.67 0.275374
Target:  5'- gGGUuacGGCaaGCGCgACGGUaCGGCcguCGCg -3'
miRNA:   3'- gCCG---CCGa-CGCGgUGCCA-GCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 22541 0.67 0.282084
Target:  5'- gGGCGGCgcgGaCGCCGacGUCGcGCuCGCg -3'
miRNA:   3'- gCCGCCGa--C-GCGGUgcCAGC-CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 4372 0.66 0.288922
Target:  5'- uGcGCGGUcaGCGCaUGCGGUCGGCGaauacuUGCa -3'
miRNA:   3'- gC-CGCCGa-CGCG-GUGCCAGCCGU------GCG- -5'
24170 5' -63.4 NC_005263.2 + 17295 0.66 0.288922
Target:  5'- uGGCgcgaGGCaGuCGCCACGGcgcgcgaauUCGGCccgGCGCc -3'
miRNA:   3'- gCCG----CCGaC-GCGGUGCC---------AGCCG---UGCG- -5'
24170 5' -63.4 NC_005263.2 + 9373 0.7 0.175472
Target:  5'- cCGGCGGCUGCGggaauuucagCGCGG-CGGCcaGCuGCu -3'
miRNA:   3'- -GCCGCCGACGCg---------GUGCCaGCCG--UG-CG- -5'
24170 5' -63.4 NC_005263.2 + 19394 0.7 0.170994
Target:  5'- uCGGCGGC-GCGCagUACGGcaacGCGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCG--GUGCCagc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 821 0.7 0.170994
Target:  5'- -aGCGGaCUGCGCU----UCGGCGCGCa -3'
miRNA:   3'- gcCGCC-GACGCGGugccAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 16486 0.73 0.092832
Target:  5'- aCGGC-GCUGCGCCGCG--CGGCcguCGCg -3'
miRNA:   3'- -GCCGcCGACGCGGUGCcaGCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 26201 0.73 0.095381
Target:  5'- gCGGCGGCcGCGCgauGCGG-CGGCcguuCGCg -3'
miRNA:   3'- -GCCGCCGaCGCGg--UGCCaGCCGu---GCG- -5'
24170 5' -63.4 NC_005263.2 + 24845 0.73 0.100679
Target:  5'- aCGGCGGUgccggUGCGCCAgcCGG-CGGCuACGg -3'
miRNA:   3'- -GCCGCCG-----ACGCGGU--GCCaGCCG-UGCg -5'
24170 5' -63.4 NC_005263.2 + 25024 0.73 0.106253
Target:  5'- gCGGUGGCUGCgGUgGCGuGUacgCGGCAgGCa -3'
miRNA:   3'- -GCCGCCGACG-CGgUGC-CA---GCCGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 969 0.72 0.112116
Target:  5'- gCGGCGGUcgccUGCGCguCGGaCGGCGCu- -3'
miRNA:   3'- -GCCGCCG----ACGCGguGCCaGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 36501 0.72 0.118281
Target:  5'- aGGCGaaguGCUGCGCCACuucaucgCGGgGCGCg -3'
miRNA:   3'- gCCGC----CGACGCGGUGcca----GCCgUGCG- -5'
24170 5' -63.4 NC_005263.2 + 41549 0.72 0.12476
Target:  5'- aCGcGCGGC-GCGCCGUGG-CGGCgAUGCg -3'
miRNA:   3'- -GC-CGCCGaCGCGGUGCCaGCCG-UGCG- -5'
24170 5' -63.4 NC_005263.2 + 10396 0.71 0.142422
Target:  5'- gGGcCGGCcgGCGa-GCGGgucCGGCGCGCg -3'
miRNA:   3'- gCC-GCCGa-CGCggUGCCa--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 46162 0.71 0.142422
Target:  5'- gCGGuuGCcgGCGUCGcCGGUgcCGGCGCGCu -3'
miRNA:   3'- -GCCgcCGa-CGCGGU-GCCA--GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 30460 0.71 0.146219
Target:  5'- gCGGCGGCcuucgcguUGCGCCACaucCGGCGCccugGCg -3'
miRNA:   3'- -GCCGCCG--------ACGCGGUGccaGCCGUG----CG- -5'
24170 5' -63.4 NC_005263.2 + 17150 0.7 0.154091
Target:  5'- -aGCGGUcGaCGUCGCGGuguUCGGCugGCa -3'
miRNA:   3'- gcCGCCGaC-GCGGUGCC---AGCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 31254 0.7 0.154091
Target:  5'- cCGcGCGGCgcgGCGCCGggcaGGUCGaagugcugucGCACGUa -3'
miRNA:   3'- -GC-CGCCGa--CGCGGUg---CCAGC----------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 24938 0.7 0.162344
Target:  5'- uCGGUGGCgGCGg-ACGG-CGGUGCGCg -3'
miRNA:   3'- -GCCGCCGaCGCggUGCCaGCCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.