miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 28222 0.67 0.256013
Target:  5'- uGGUGGcCUGCaucgGCCGCGcUCGcCGCGCu -3'
miRNA:   3'- gCCGCC-GACG----CGGUGCcAGCcGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 6058 0.67 0.282084
Target:  5'- uGGCGGCgcgcuucacgcGCGCCGacaGGaagccUUGGCGCGg -3'
miRNA:   3'- gCCGCCGa----------CGCGGUg--CC-----AGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 20126 0.67 0.275374
Target:  5'- gGGUuacGGCaaGCGCgACGGUaCGGCcguCGCg -3'
miRNA:   3'- gCCG---CCGa-CGCGgUGCCA-GCCGu--GCG- -5'
24170 5' -63.4 NC_005263.2 + 7020 0.67 0.268793
Target:  5'- uGGCGGC-GCGaaACGuGUCGacgaucguGCGCGCc -3'
miRNA:   3'- gCCGCCGaCGCggUGC-CAGC--------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 29508 0.67 0.256013
Target:  5'- -cGCcGCUGCGgCGuCcGUCGGCGCGCc -3'
miRNA:   3'- gcCGcCGACGCgGU-GcCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 45470 0.67 0.256013
Target:  5'- aCGcCGGCaaGCGCgaugaaccgCGCGGUCGGCcugucGCGCa -3'
miRNA:   3'- -GCcGCCGa-CGCG---------GUGCCAGCCG-----UGCG- -5'
24170 5' -63.4 NC_005263.2 + 43086 0.67 0.256013
Target:  5'- gGGcCGGCUgucgaGCGCgGCGGaaGGCAcCGUg -3'
miRNA:   3'- gCC-GCCGA-----CGCGgUGCCagCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 30935 0.67 0.256013
Target:  5'- aCGcGCGaGCUGCGCauuCGGcuucUCGGC-CGUg -3'
miRNA:   3'- -GC-CGC-CGACGCGgu-GCC----AGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 24101 0.67 0.256013
Target:  5'- gCGGCGGCUacGUGCCgggcuaucaguACGGcaccaCGGCACu- -3'
miRNA:   3'- -GCCGCCGA--CGCGG-----------UGCCa----GCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 22541 0.67 0.282084
Target:  5'- gGGCGGCgcgGaCGCCGacGUCGcGCuCGCg -3'
miRNA:   3'- gCCGCCGa--C-GCGGUgcCAGC-CGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 44031 0.67 0.282084
Target:  5'- gGGUGGCgacuuCGCCGCGuuccguggCGGCugGUg -3'
miRNA:   3'- gCCGCCGac---GCGGUGCca------GCCGugCG- -5'
24170 5' -63.4 NC_005263.2 + 16583 0.67 0.282084
Target:  5'- cCGGCGGCgacGCGuUCGcCGGgcucGCGCGCg -3'
miRNA:   3'- -GCCGCCGa--CGC-GGU-GCCagc-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 34376 0.66 0.317573
Target:  5'- cCGGCGGUaaCGCCGCGagcacGUCGG-ACGg -3'
miRNA:   3'- -GCCGCCGacGCGGUGC-----CAGCCgUGCg -5'
24170 5' -63.4 NC_005263.2 + 8807 0.66 0.302987
Target:  5'- uCGcGCGcGCaUGCGCCugcCGGccgcUCGGCGUGCg -3'
miRNA:   3'- -GC-CGC-CG-ACGCGGu--GCC----AGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 37992 0.66 0.295889
Target:  5'- uGGCGGCaacgaacuCGCCACGaUUGGUGcCGCa -3'
miRNA:   3'- gCCGCCGac------GCGGUGCcAGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 38578 0.66 0.291693
Target:  5'- uCGGUcGCUGcCGCgCACGGcCGcacgauucagcccgcGCACGCg -3'
miRNA:   3'- -GCCGcCGAC-GCG-GUGCCaGC---------------CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17295 0.66 0.288922
Target:  5'- uGGCgcgaGGCaGuCGCCACGGcgcgcgaauUCGGCccgGCGCc -3'
miRNA:   3'- gCCG----CCGaC-GCGGUGCC---------AGCCG---UGCG- -5'
24170 5' -63.4 NC_005263.2 + 4372 0.66 0.288922
Target:  5'- uGcGCGGUcaGCGCaUGCGGUCGGCGaauacuUGCa -3'
miRNA:   3'- gC-CGCCGa-CGCG-GUGCCAGCCGU------GCG- -5'
24170 5' -63.4 NC_005263.2 + 21082 0.66 0.288922
Target:  5'- aGGCGGCca------GGUCGGCACGCc -3'
miRNA:   3'- gCCGCCGacgcggugCCAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17521 0.66 0.288922
Target:  5'- aGGCGGCgGCuaUCACGGcaaaCGGUguGCGCg -3'
miRNA:   3'- gCCGCCGaCGc-GGUGCCa---GCCG--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.