miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24170 5' -63.4 NC_005263.2 + 27403 0.68 0.23195
Target:  5'- --cCGGCUGCGUCACGacCGGCGCa- -3'
miRNA:   3'- gccGCCGACGCGGUGCcaGCCGUGcg -5'
24170 5' -63.4 NC_005263.2 + 1668 0.68 0.23195
Target:  5'- cCGGCaGCUuuuuguagcGCGCCGCcaguucgguauuGGUCGGUugGg -3'
miRNA:   3'- -GCCGcCGA---------CGCGGUG------------CCAGCCGugCg -5'
24170 5' -63.4 NC_005263.2 + 14255 0.68 0.23195
Target:  5'- gGGCuGGCU-UGCgGCGGcCGGCgcaACGCg -3'
miRNA:   3'- gCCG-CCGAcGCGgUGCCaGCCG---UGCG- -5'
24170 5' -63.4 NC_005263.2 + 38387 0.68 0.226239
Target:  5'- uGGCGaacgagcgcaaGC-GCGCCgcaGCGGUCGaGCAgGCa -3'
miRNA:   3'- gCCGC-----------CGaCGCGG---UGCCAGC-CGUgCG- -5'
24170 5' -63.4 NC_005263.2 + 38320 0.68 0.220649
Target:  5'- -cGCGGCgagGCGCCcccguucgguGCGauggaugcgaaGUCGGUGCGCa -3'
miRNA:   3'- gcCGCCGa--CGCGG----------UGC-----------CAGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 46844 0.68 0.220649
Target:  5'- aGGCGGC-GCGCCAaGGa--GCACGUc -3'
miRNA:   3'- gCCGCCGaCGCGGUgCCagcCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 9195 0.68 0.208763
Target:  5'- -cGCGGgUGCGCaaACGGgcggcgcucguaCGGCGCGCg -3'
miRNA:   3'- gcCGCCgACGCGg-UGCCa-----------GCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 1421 0.67 0.243734
Target:  5'- uCGGCgcgcgccgccuuGGCUGCGCgcgaggcuuCGCGGcgcucgCGGCGCuGCa -3'
miRNA:   3'- -GCCG------------CCGACGCG---------GUGCCa-----GCCGUG-CG- -5'
24170 5' -63.4 NC_005263.2 + 17815 0.67 0.249811
Target:  5'- aGGCGGCcgagGaUGCCGCGcG-CGGCccgauuGCGCa -3'
miRNA:   3'- gCCGCCGa---C-GCGGUGC-CaGCCG------UGCG- -5'
24170 5' -63.4 NC_005263.2 + 28222 0.67 0.256013
Target:  5'- uGGUGGcCUGCaucgGCCGCGcUCGcCGCGCu -3'
miRNA:   3'- gCCGCC-GACG----CGGUGCcAGCcGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17590 0.67 0.256013
Target:  5'- gCGGCGGCcaagGCGCgCAgGGcaucuuccagUGGCGCGg -3'
miRNA:   3'- -GCCGCCGa---CGCG-GUgCCa---------GCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 35551 0.67 0.249811
Target:  5'- gGGCGG--GCGCUACGGcgccgcCGGC-CGCc -3'
miRNA:   3'- gCCGCCgaCGCGGUGCCa-----GCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 32886 0.67 0.249811
Target:  5'- gGGCGGCgaguuucgugGCGUCGgcguCGG-CGGCcCGCu -3'
miRNA:   3'- gCCGCCGa---------CGCGGU----GCCaGCCGuGCG- -5'
24170 5' -63.4 NC_005263.2 + 23990 0.67 0.249811
Target:  5'- uCGGCGGCUacccgaaagGCGCCGCGcugcaaaguGcCGaCGCGCu -3'
miRNA:   3'- -GCCGCCGA---------CGCGGUGC---------CaGCcGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 17397 0.67 0.249811
Target:  5'- gGcGCGGCcgcGCGCCugGCGGgCGGUGuCGCa -3'
miRNA:   3'- gC-CGCCGa--CGCGG--UGCCaGCCGU-GCG- -5'
24170 5' -63.4 NC_005263.2 + 3177 0.67 0.249811
Target:  5'- uGGCGcggaauaaCUGcCGCUGCGcGUCGGCgaGCGCg -3'
miRNA:   3'- gCCGCc-------GAC-GCGGUGC-CAGCCG--UGCG- -5'
24170 5' -63.4 NC_005263.2 + 29614 0.67 0.249811
Target:  5'- aGGC-GUUGCGCUuCGGaCGGUACGa -3'
miRNA:   3'- gCCGcCGACGCGGuGCCaGCCGUGCg -5'
24170 5' -63.4 NC_005263.2 + 28791 0.66 0.328095
Target:  5'- uGGUugccuugcgcauccgGGC-GCGUCACGGUgaccgugaCGcGCACGCg -3'
miRNA:   3'- gCCG---------------CCGaCGCGGUGCCA--------GC-CGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 2289 0.79 0.032485
Target:  5'- uCGGCaGGUcgUGCGCCGUGGcCGGCACGCc -3'
miRNA:   3'- -GCCG-CCG--ACGCGGUGCCaGCCGUGCG- -5'
24170 5' -63.4 NC_005263.2 + 42022 0.78 0.041772
Target:  5'- gCGGcCGGCcGCGCCAaggcuuccuGUCGGCGCGCg -3'
miRNA:   3'- -GCC-GCCGaCGCGGUgc-------CAGCCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.